AMCG00007547 (clg23h15orf48,clg1h15orf48,c13h15orf48)


Basic Information

Item Value
gene id AMCG00007547
gene name clg23h15orf48,clg1h15orf48,c13h15orf48
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22131573 ~ 22134714 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007547
cttaaacaaaaacatatatggCCTCAACGTTACTCAAACACATACCTGATCACATAGCTTTacagctttttcattttacagaagACCGAATCGATGAGCAGAGAACATGTTGCAACCATTCAGTCGCAAGAAAAGCTTTCTGAAAGATTAAACGATCCCAAAGTCTCTACTTTCGTAACAGATGAACGAGAAAAATGTGATGTAATGTAAAGCTGTCCGTTTTCTGGTCTCcatgatataataataaacatacatgaGCAAAATTAGCCGAGGGACCCGGCATCTATACCGCACTGCAGAGCACCGCGACTAGAGTGAGGCGAACTTCGGGCTTTCACCGAGAGGGGGCGCTATCGAAACACCGAGATGGCAACAGTTAGTAGATGAGGGTGTTGTATCAACCCACTACCTATCTTAGTTGCgttttgaattcaatatatacagtaagaGTCTGTCTACGTGACTTCGACCTCGTCTGCATTTCCAAAAACGATATAAAAAGAGGAGGGGCGGGAACAAGTGATCAAAACTCCCAGTGACACCTTACAGAGCTGTAGGCATCTCCAGTGGAAGGCATcaccaggaaaacaaaaatgtcttttGGGTTTTTTCAAATGCTGAGGAAGAAGAAAGAActaaTTCCCTTAATTGGGTTTATGGCCATTGCAGCAACTGGTGCTACCACCGCCTCCATTTACTTCTTGATGACAAAAACAGACGTGATTATTAACAAGTCTGGAAATCCTGAGCCATGGGACAACCTGGATCCTTCAAAACCCCAAAagCTCATGACAATAAACCAGCAGTGGAAGCCTGTGGAGGAGCTCCAGATGCTGAAGAAAATGACCAAGTGAGGAAGTACCTGCCAGCCCTTAGGGTCTCCGAGTCCAACACTCTCTGCCTGCACCCTATCAATCTAACGGAATCATTTCTGCACAGACTAGACTCACTGAAATGCAGTGTGCGGAAATGCTTCTGCTACATTGGTAGGGTCTGATCACGCACAGTTCTGTGGGACTGTAGTAGATCATCTAACATGAGGATTCCAGTACAATACTATAACTTTCAAAGCAATTTCCGCACACCTAGTGAAACAGCAAAGGTTAGCAGTCAGAAGTATTGTTCACTTTACATGTGattgtattatgtaaaacaaaatgcatattgtatatatatatattggtgtaaaaataaagattttcattttgaagaccTCGCCATCAGTTTGGTTGCTTTCTGTGGCAGAAAAAGCCATTTCCACTGTTCCATATAGAAATTGAAACACAGAACTGGTTGTAAATCTGACCtcaaacatgatttatttattagtgtcAGCATAGCATGTAAGCACATGAGGAATGcaactgtttttcagttttcagtcagAAACAGGTGGTTATTGTGATGTGATTGGGATGGGAATGGTCCGTGGTTCCATTGGTTTGACTGAGCTTAAATGTGTAACTCTTTTAatcaataattcattttaaaagtctaaAGTCCCAACAGACACCAGTATCACTGAGATTACTTAGGGTTGGCTGCATCATAATGAACAAGCAAATCATAAGCAAAGCAGGGCCATAATATTTATATGACTTTCCAGGTTAGGTTTCACATCCCTATATTCCAGCCTCTTATTCTGTATCAATTCAATGGTCAGTTCCCCTTTTTGTTGTTTCCAGGGGAGGGGCTTATTTAATGCAACAAACAGTATTTAATTCCATAGAAATGTGCCGTCTCTCtcagaatttgttttaaagatatcCACAAACCATTATGCTTCACTGTGGTTCACCTGGCAGTAACTTCACTGAATGTGTATGTTCTCAATATGCTTTGTTTACAATATTCACAGAAAGTTTATTGTGTCTTTTATTCTCTTGGATCATTTAATCTTTAGACTGTCagatactgtaaataataaatatcagtgCATTTACA
>TU30809
ACTTCGACCTCGTCTGCATTTCCAAAAACGATATAAAAAGAGGAGGGGCGGGAACAAGTGATCAAAACTCCCAGTGACACCTTACAGAGCTGTAGGCATCTCCAGTGGAAGGCATcaccaggaaaacaaaaatgtcttttGGGTTTTTTCAAATGCTGAGGAAGAAGAAAGAActaaTTCCCTTAATTGGGTTTATGGCCATTGCAGCAACTGGTGCTACCACCGCCTCCATTTACTTCTTGATGACAAAAACAGACGTGATTATTAACAAGTCTGGAAATCCTGAGCCATGGGACAACCTGGATCCTTCAAAACCCCAAAagCTCATGACAATAAACCAGCAGTGGAAGCCTGTGGAGGAGCTCCAGATGCTGAAGAAAATGACCAAGTGAGGAAGTACCTGCCAGCCCTTAGGGTCTCCGAGTCCAACACTCTCTGCCTGCACCCTATCAATCTAACGGAATCATTTCTGCACAGACTAGACTCACTGAAATGCAGTGTGCGGAAATGCTTCTGCTACATTGGTAGGGTCTGATCACGCACAGTTCTGTGGGACTGTAGTAGATCATCTAACATGAGGATTCCAGTACAATACTATAACTTTCAAAGCAATTTCCGCACACCTAGTGAAACAGCAAAGGTTAGCAGTCAGAAGTATTGTTCACTTTACATGTGattgtattatgtaaaacaaaatgcatattgtatatatatatattggtgtaaaaataaagattttcattttgaagaccTCGCCATCAGTTTGGTTGCTTTCTGTGGCAGAAAAAGCCATTTCCACTGTTCCATATAGAAATTGAAACACAGAACTGGTTGTAAATCTGACCtcaaacatgatttatttattagtgtcAGCATAGCATGTAAGCACATGAGGAATGcaactgtttttcagttttcagtcagAAACAGGTGGTTATTGTGATGTGATTGGGATGGGAATGGTCCGTGGTTCCATTGGTTTGACTGAGCTTAAATGTGTAACTCTTTTAatcaataattcattttaaaagtctaaAGTCCCAACAGACACCAGTATCACTGAGATTACTTAGGGTTGGCTGCATCATAATGAACAAGCAAATCATAAGCAAAGCAGGGCCATAATATTTATATGACTTTCCAGGTTAGGTTTCACATCCCTATATTCCAGCCTCTTATTCTGTATCAATTCAATGGTCAGTTCCCCTTTTTGTTGTTTCCAGGGGAGGGGCTTATTTAATGCAACAAACAGTATTTAATTCCATAGAAATGTGCCGTCTCTCtcagaatttgttttaaagatatcCACAAACCATTATGCTTCACTGTGGTTCACCTGGCAGTAACTTCACTGAATGTGTATGTTCTCAATATGCTTTGTTTACAATATTCACAGAAAGTTTATTGTGTCTTTTATTCTCTTGGATCATTTAATCTTTAGACTGTCagatactgtaaataataaatatcag

Function

NR:

description
PREDICTED: normal mucosa of esophagus-specific gene 1 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007547 True 1944 mRNA 0.40 5 22131573 22134714
TU30809 False 1472 lncRNA 0.39 5 22132035 22134704

Neighbor

gene id symbol gene type direction distance location
AMCG00007548 NA coding upstream 2096 22123647 ~ 22129477 (+)
AMCG00007537 NA coding upstream 78952 22050281 ~ 22052621 (+)
AMCG00007536 fgf7 coding upstream 97665 22033242 ~ 22033908 (+)
AMCG00007538 NA coding upstream 123952 21984244 ~ 22007621 (+)
AMCG00007532 dut coding upstream 324516 21803173 ~ 21807057 (+)
AMCG00007546 bloc1s6 coding downstream 18963 22153677 ~ 22158549 (+)
AMCG00007549 sqrdl,LOC102778185,LOC103363827 coding downstream 27490 22162204 ~ 22174755 (+)
AMCG00007555 NA coding downstream 70062 22204776 ~ 22216240 (+)
AMCG00007557 trpm7 coding downstream 97813 22232527 ~ 22261853 (+)
AMCG00007556 NA coding downstream 133800 22268514 ~ 22274179 (+)
G24384 NA non-coding upstream 733526 21386225 ~ 21398047 (+)
G24311 NA non-coding upstream 1250649 20880546 ~ 20880924 (+)
G24310 NA non-coding upstream 1254788 20876584 ~ 20876785 (+)
G24256 NA non-coding upstream 1637568 20492904 ~ 20494005 (+)
G24258 NA non-coding upstream 1638956 20492396 ~ 20492617 (+)
G24570 NA non-coding downstream 10125 22144839 ~ 22148238 (+)
G24654 NA non-coding downstream 206022 22340736 ~ 22343616 (+)
G24692 NA non-coding downstream 315393 22450107 ~ 22450404 (+)
G24693 NA non-coding downstream 319102 22453816 ~ 22454055 (+)
G24695 NA non-coding downstream 320552 22455266 ~ 22456761 (+)
AMCG00007514 arpp19,LOC103358163,LOC105892485,LOC107740885,LOC107569706 other upstream 1064790 21060159 ~ 21066783 (+)
AMCG00007483 NA other upstream 2180145 19939170 ~ 19951428 (+)
G23893 eif3j,eif3ja,LOC107688938,LOC107712512 other upstream 3075440 19050977 ~ 19056133 (+)
AMCG00007452 NA other upstream 3116674 19007550 ~ 19014899 (+)
AMCG00007433 NA other upstream 3561101 18567242 ~ 18570472 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other downstream 54531 22189245 ~ 22203951 (+)
AMCG00007553 NA other downstream 128806 22263520 ~ 22266409 (+)
G24606 NA other downstream 146986 22281700 ~ 22282958 (+)
AMCG00007585 star5,stard5,LOC104953929 other downstream 999097 23133811 ~ 23139521 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other downstream 1054746 23189460 ~ 23193521 (+)

Expression


Co-expression Network