AMCG00007549 (sqrdl,LOC102778185,LOC103363827)


Basic Information

Item Value
gene id AMCG00007549
gene name sqrdl,LOC102778185,LOC103363827
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22162204 ~ 22174755 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007549
GGTGTAAACATGGCCAGTTCAGTTTTCTGTGTGCGGCGAGCGTTGTGGCAGCCCAGTCTCGGATTGTGCAACACAGAGGCCTGCCATTTCCATGCAAGCAGTGCCTGCAGGGCAAAGGAGCACTACAAGGCGCTGGTGCTGGGCGGGGGCAGCGGAGGAATCACTATGAGTGCCCGTTTGAAGCGGAAAGTCGGGGCTGAAAATGTCGCCGTCGTCGAGCCCAGCGAGAGTCATTATTACCAGCCACTCTGGACGCTGGTTGGTGCAGGAGCAAAAAGTGTCAGCACCTCTCGGCGATCCACTGCCAGTGTGATGCCATCTGGGGTGAAGTGGATAAAATCACGAGTGCAGGAGATGAACCCTGACAAGAACTGCGTGCGCACTGATGATGGGAAAGAGatatCTTATGAGTATTTGATTGTGGCCCTTGGACTGCAGCTTCATTATGAAAAGATCAAGGGACTTCCAGAAGGTTTTAAGTATCCGAAGATTGGCTCAAACTACTCTGTGGACACAGTGGGGAAGACCTGGAAAGCCCTGCAAGACTTCAGGGAGGGCAatgccattttcacattcccCAACACACCTGTGAAATGTGCCGGGGCACCACAGAAGATCATGTACCTGTCAGATGCCTATTTCAGAAAGACAGGAAAGAGACCCAAAGCCAACATCATCTACAATACGTCCCAGCCCGTGTTGTTCGGGGTTAAGAAATATGCCGACTCCCTGTGGAATATCGTGAAGACCCGGGATCTGAATGTGAACCTCAGACATAACCTCATTGAGGTCAGAGCGGACAGGCAGGAAGCTGTGTTTGAAAAGCTAGACAACCCTGGAGAAACGGTGGTTTTCGAGtatgaAATGCTTCATGTTACACCTCCTATGGGACCACCAGACGTTTTGAAGAGCAGCAAGTTGGCTGATGAAGGAGGATGGCTGGACATAGACAAAGACATGCTTCAGCACAAGAAATATCCCAATGTGTTTGGTATCGGAGACTGCACTAATCTGCCAACATCAAAAACAGCTGCTGCAGTAGCTGCCCAGTCTGCCATTCTCGACAGAACTATATCAAAGGTGATGAAGAACGAAAAGCCTGATAAAAAGTATGATGGGTACACATCATGCCCGCTGGTTACAAGCTATAATACAGTGATCCTGGCTGAGTTTGACTACACTGGGCAGCCCTTGGAAACCTTCCCCATTGACCAGAGCAAAGAGAGGAGGACCATGTACCACATGAAAGCAGACGTGATGCCACATCTGTACTGGCATGGCCTTCTGAAGGGACTGTGGGGAGGACCTGGCCCGTACAGGAAGATCATGCACCTAGGTATGAAATAG

Function

NR:

description
PREDICTED: sulfide:quinone oxidoreductase, mitochondrial

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K22470 SQOR; eukaryotic sulfide quinone oxidoreductase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007549 True 1347 mRNA 0.50 9 22162204 22174755

Neighbor

gene id symbol gene type direction distance location
AMCG00007546 bloc1s6 coding upstream 3655 22153677 ~ 22158549 (+)
AMCG00007548 NA coding upstream 32727 22123647 ~ 22129477 (+)
AMCG00007537 NA coding upstream 109583 22050281 ~ 22052621 (+)
AMCG00007536 fgf7 coding upstream 128296 22033242 ~ 22033908 (+)
AMCG00007538 NA coding upstream 154583 21984244 ~ 22007621 (+)
AMCG00007555 NA coding downstream 30021 22204776 ~ 22216240 (+)
AMCG00007557 trpm7 coding downstream 57772 22232527 ~ 22261853 (+)
AMCG00007556 NA coding downstream 93759 22268514 ~ 22274179 (+)
AMCG00007560 gabpb1 coding downstream 121299 22296054 ~ 22307259 (+)
AMCG00007559 NA coding downstream 147969 22322724 ~ 22331465 (+)
G24570 NA non-coding upstream 13966 22144839 ~ 22148238 (+)
G24384 NA non-coding upstream 764157 21386225 ~ 21398047 (+)
G24311 NA non-coding upstream 1281280 20880546 ~ 20880924 (+)
G24310 NA non-coding upstream 1285419 20876584 ~ 20876785 (+)
G24256 NA non-coding upstream 1668199 20492904 ~ 20494005 (+)
G24654 NA non-coding downstream 165981 22340736 ~ 22343616 (+)
G24692 NA non-coding downstream 275352 22450107 ~ 22450404 (+)
G24693 NA non-coding downstream 279061 22453816 ~ 22454055 (+)
G24695 NA non-coding downstream 280511 22455266 ~ 22456761 (+)
G24698 NA non-coding downstream 284265 22459020 ~ 22459517 (+)
AMCG00007547 clg23h15orf48,clg1h15orf48,c13h15orf48 other upstream 27490 22131573 ~ 22134714 (+)
AMCG00007514 arpp19,LOC103358163,LOC105892485,LOC107740885,LOC107569706 other upstream 1095421 21060159 ~ 21066783 (+)
AMCG00007483 NA other upstream 2210776 19939170 ~ 19951428 (+)
G23893 eif3j,eif3ja,LOC107688938,LOC107712512 other upstream 3106071 19050977 ~ 19056133 (+)
AMCG00007452 NA other upstream 3147305 19007550 ~ 19014899 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other downstream 14490 22189245 ~ 22203951 (+)
AMCG00007553 NA other downstream 88765 22263520 ~ 22266409 (+)
G24606 NA other downstream 106945 22281700 ~ 22282958 (+)
AMCG00007585 star5,stard5,LOC104953929 other downstream 959056 23133811 ~ 23139521 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other downstream 1014705 23189460 ~ 23193521 (+)

Expression


Co-expression Network