AMCG00007553


Basic Information

Item Value
gene id AMCG00007553
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22263520 ~ 22266409 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007553
cttCATATTTTCATTCGGGGCAGCTCATTTCAACCGGTAGCCCATTGGTTTCAGACACCGGGCAGCTCATCCTGATGGGAAGcgcagtttgtcagaacaccggcTTTCATGAAATCGATGTGTAGCAAATTGTATTAAAagtggttttaattaattaatttaagtaacTTCTAGCCAGTCATGTTGTTGCTATGTTTCAGTCAGCGCCCACGCAGtctaattgcatttaaaaatgcccgAGTCATCGTGATACCGACGGAAAGCCGACGGACCGGTTCCACCGCCCTGTGCGGAGAGCGGAGCGTCACAGGGAGGGGCGTCCGCGCAGATTGTGCTGTAGCGCTTCAAACCAAGTCCTCCCAGTTGTGATCGCACGACTACTGAGAAACGAGAAGAGCAGCCATGTCGGTAAAAGTATACATAGAATACTGTGGGGGATGAGGGTACGATTCCCGCTACCAGGACCTTGTGGTTCACATCAAGAAGCAGCTTCCTGATGCAGAGGTCTCTGGAGGTGTAGGGCGGAGGGGGAGTTTTGAGATTACCATCAATGATCTGCTGGTTTTCTCCAAGCTGGAATGTAAAGGCTTCCCAGTAACTGAAGAAGTGATCGAAGCTGCGAAGCAGGCCAGCCGTGGAGAGAAGATGCAGAAGGTGACAAAGAAGGAAGGCTGTGTGGTCATGTAGAGCCAAGGGTTTAAAAGGCAGAAATAACTCTAAAAATGTAAACGGGAGAGCTGGTTCTTTTAATGATTGTCTTCACTGAAACAAGAGGTGGACACATGATAAAACAAGAACGTGCTCTACAGATTTATATCTTAAGACTTATTTCTCTGTGTTTCCAgagattatatacatatttatatatacatcatgtCACTGATAATAATCTCAATAAAGCTACTGGACAGAGATGAAAGGCACTTGCAGTACTACTGTGTATAGTACTGCATAGGGAAGAGTGGAGGTATTGTTTTGTCATTGACGGCAGCAGGGTGACACCAACATGTAGTACTAGTGTTACGTTTCCACAGCCACATTTGCACAAAGCTGTAGTTTCACACCTGCCCAGTGTAGCAACAAAGTGGACACTGAGAACTGAGTCCACAGCCCTGTAGTGCCCTTCGGGTAATGTAGCTGCCCTGGCTGTCttgagatggggaggggggcagaaagaattaagaaaaataaaaggcttgTTGAAATGTGACTGTGGAATTGCAACCTTAGCTTTTTTCACCCTGTGATTTCAGGAGCTTATATTACCACAAAGTAAATTACTTGGCAGATTACAATATTTCAGATGAAAACAGactgaaataatgtaatctgCACAGTCACTTACTTAGTGGTATAAAAGTTAGATTTTGTTTAaagcatatatatgtatatgtatgtataacacatgcttttttgtttttattacaataagggaatatttttgtattgcttaatTAGAATCAAAATAATACTCTGTAGACCTAATGTGTAaagtaacaataatataaaaatgtcatgTGACTGcttgtcttgtttttgtcattGGATCTGCCCCATGGCAGTTGTTTCATGTACAATGGGCAGATCAGGAGTAATGCTGTTGCATACTATTTGTGTAATcttataatattttgaatatgtattaacattttgaatagtatacatatatattattttacatatacttatgtgtatttatatctgcattaaacaaatctgtctgTTAATGCTTTCTTGTAATGTTGAATTTAATTACTGAACAAAACTGCTGAAATAACTGGTAAAATC
>TU30862
CGCGCAGATTGTGCTGTAGCGCTTCAAACCAAGTCCTCCCAGTTGTGATCGCACGACTACTGAGAAACGAGAAGAGCAGCCATGTCGGTAAAAGTATACATAGAATACTGTGGGGGATGAGGGTACGATTCCCGCTACCAGGACCTTGTGGTTCACATCAAGAAGCAGCTTCCTGATGCAGAGGTCTCTGGAGGTGTAGGGCGGAGGGGGAGTTTTGAGATTACCATCAATGATCTGCTGGTTTTCTCCAAGCTGGAATGTAAAGGCTTCCCAGTAACTGAAGAAGTGATCGAAGCTGCGAAGCAGGCCAGCCGTGGAGAGAAGATGCAGAAGGTGACAAAGAAGGAAGGCTGTGTGGTCATGTAGAGCCAAGGGTTTAAAAGGCAGAAATAACTCTAAAAATGTAAACGGGAGAGCTGGTTCTTTTAATGATTGTCTTCACTGAAACAAGAGGTGGACACATGATAAAACAAGAACGTGCTCTACAGATTTATATCTTAAGACTTATTTCTCTGTGTTTCCAgagattatatacatatttatatatacatcatgtCACTGATAATAATCTCAATAAAGCTACTGGACAGAGATGAAAGGCACTTGCAGTACTACTGTGTATAGTACTGCATAGGGAAGAGTGGAGGTATTGTTTTGTCATTGACGGCAGCAGGGTGACACCAACATGTAGTACTAGTGTTACGTTTCCACAGCCACATTTGCACAAAGCTGTAGTTTCACACCTGCCCAGTGTAGCAACAAAGTGGACACTGAGAACTGAGTCCACAGCCCTGTAGTGCCCTTCGGGTAATGTAGCTGCCCTGGCTGTCttgagatggggaggggggcagaaagaattaagaaaaataaaaggcttgTTGAAATGTGACTGTGGAATTGCAACCTTAGCTTTTTTCACCCTGTGATTTCAGGAGCTTATATTACCACAAAGTAAATTACTTGGCAGATTACAATATTTCAGATGAAAACAGactgaaataatgtaatctgCACAGTCACTTACTTAGTGGTATAAAAGTTAGATTTTGTTTAaagcatatatatgtatatgtatgtataacacatgcttttttgtttttattacaataagggaatatttttgtattgcttaatTAGAATCAAAATAATACTCTGTAGACCTAATGTGTAaagtaacaataatataaaaatgtcatgTGACTGcttgtcttgtttttgtcattGGATCTGCCCCATGGCAGTTGTTTCATGTACAATGGGCAGATCAGGAGTAATGCTGTTGCATACTATTTGTGTAATcttataatattttgaatatgtattaacattttgaatagtatacatatatattattttacatatacttatgtgtatttatatctgcattaaacaaatctgtctgTTAATGCTTTCTTGTAATGTTGAATTTAATTACTGAACAAAACTGCTGAAATAACTGGTAAAATCAAAATGAACGTTTTTATTGTTGCATcttttgaatttcaaattaatctaattttcAGGTGGAGTAAATTGCACTAAAtttaaaagcattgaaaatGGAATGAATGGTCTTTACCTCGGCTTACC

Function

GO: NA

KEGG:

id description
K07401 K07401; selenoprotein W-related protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007553 True 1788 mRNA 0.40 4 22263520 22266286
TU30862 False 1590 lncRNA 0.38 4 22263841 22266409

Neighbor

gene id symbol gene type direction distance location
AMCG00007557 trpm7 coding upstream 1667 22232527 ~ 22261853 (+)
AMCG00007555 NA coding upstream 47280 22204776 ~ 22216240 (+)
AMCG00007549 sqrdl,LOC102778185,LOC103363827 coding upstream 88765 22162204 ~ 22174755 (+)
AMCG00007546 bloc1s6 coding upstream 104971 22153677 ~ 22158549 (+)
AMCG00007548 NA coding upstream 134043 22123647 ~ 22129477 (+)
AMCG00007556 NA coding downstream 2105 22268514 ~ 22274179 (+)
AMCG00007560 gabpb1 coding downstream 29645 22296054 ~ 22307259 (+)
AMCG00007559 NA coding downstream 56315 22322724 ~ 22331465 (+)
AMCG00007561 gatm,LOC106595761 coding downstream 87203 22353612 ~ 22364194 (+)
AMCG00007562 pde8a,LOC100690151,LOC102210709,LOC105889152,LOC101463592 coding downstream 142519 22408928 ~ 22431845 (+)
G24570 NA non-coding upstream 115282 22144839 ~ 22148238 (+)
G24384 NA non-coding upstream 865473 21386225 ~ 21398047 (+)
G24311 NA non-coding upstream 1382596 20880546 ~ 20880924 (+)
G24310 NA non-coding upstream 1386735 20876584 ~ 20876785 (+)
G24256 NA non-coding upstream 1769515 20492904 ~ 20494005 (+)
G24654 NA non-coding downstream 74327 22340736 ~ 22343616 (+)
G24692 NA non-coding downstream 183698 22450107 ~ 22450404 (+)
G24693 NA non-coding downstream 187407 22453816 ~ 22454055 (+)
G24695 NA non-coding downstream 188857 22455266 ~ 22456761 (+)
G24698 NA non-coding downstream 192611 22459020 ~ 22459517 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other upstream 59569 22189245 ~ 22203951 (+)
AMCG00007547 clg23h15orf48,clg1h15orf48,c13h15orf48 other upstream 128806 22131573 ~ 22134714 (+)
AMCG00007514 arpp19,LOC103358163,LOC105892485,LOC107740885,LOC107569706 other upstream 1196737 21060159 ~ 21066783 (+)
AMCG00007483 NA other upstream 2312092 19939170 ~ 19951428 (+)
G23893 eif3j,eif3ja,LOC107688938,LOC107712512 other upstream 3207387 19050977 ~ 19056133 (+)
G24606 NA other downstream 15291 22281700 ~ 22282958 (+)
AMCG00007585 star5,stard5,LOC104953929 other downstream 867402 23133811 ~ 23139521 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other downstream 923051 23189460 ~ 23193521 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other downstream 1391441 23657850 ~ 23670079 (+)
AMCG00007631 NA other downstream 1925812 24192221 ~ 24194481 (+)

Expression


Co-expression Network