AMCG00007556


Basic Information

Item Value
gene id AMCG00007556
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22268514 ~ 22274179 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007556
ATGGATACCAGTTTTGCTACTATCAAAGAGGTTCAGTGGCTGCCAGAGGAATGTCCACTCGTTGAAGCGGTGAGTGTGGCCTCTGAGCAGGACAGCCTGTGCAGTCAAATCCTGTTCCGGTCCAGGAGGGTGAAACCATTTCCAGAGGGATTCAAGATTAAAGCCGGTCCAACAAAAGCATCTCGCGGTCAATCCGGGAAGGATGTGTTCTTACAACTGCTGGACAGGAATGTGATCCAGGTGCTGTGCAAAAGTGTCAACACTCAGGCTGCAGAGGTGGGTCCTGAGATCAGCGAGGGGAAGAACAAGAGGAGAGCTGTGCAGCATGCAGAGTTTTTGGCGTTTGTGGCCGTCCCCCTGCGAGGGGGCGTTTTCACAGGCATCCGGGACAACCGAGTTCATGACGCCATTGCTTTCGTGGAAATATGGCTAGACCGTTTCCCAAGGAGTCGCTTCCAGGATATTCTGCAGCATCTAAGCGGAAAACAGGAAAATGAGGAGGAACAGTGGAAAACCTTTTACAGCCTGCAAGGGAAAATCTCTAGGAATTTTCAGGTGTCATATCTCCCTGGACAGAAACTTTGCGTAAAAAAGTATACTCTGTCCCATGGAGGCCAGCCAGCAAGGCCTGACCTGAGAATAGCTCTGCTGTGTGATGTGCAGAGTGGATATGTGTGTAACTTCTGCCTGTATTCACCGGCAAGGCTTCTCCAAAACCCAAAGTGTCCCACTGTGGTGCAGGTGCTGCACCAGCTCCTGAAGCCGTACTATAACAAGGGCTATCAAGTGCAGCTGGACAGCTCAGCCTGCATGGAGGGGAGGCTGAGTAAGCGATTCTCCGACCATGGTATACAGCTTAATTTCACGTGTTTCTGGGCTGGAGAGGAAACGCCAGGACCAGAGGAGGCAGGGTGCAACCGGGGTACAGGCATGGGGCCAGGCCCAGGGCTCAGCGGCCTCCTCAACTCTGGGAACTCCTGCTACCTGAGTGCAGTTCTGCACTGCCTCTCCAACACCACCCCCCTGCTCGAGTACTTCCTGGATGAAAGAAACCGCAGCGCCATTTGCAAGCAGAAGAGGACCTTGGCCGGTGCTCTGGTGAGATTCCTGTCAGAGATGTGGTTTGGGGGCCAGGAGACGCTGGCCCCTACGGAGATGAGGTCTGTGATCAGTGATCTCCACCCGCAGTTTGACAGCAGATCTCAGCAGGATGCACAGGAGCTGCTTCTCTACCTCCTCAATGGACTGCACGAGGACCTCAAAAACaAAGCAGAGAGGAGATCGCTGAGCAGTTTCTTGTTGAAGAGGGAGAACGGAGGGGCATCTGCCACCCCCGAGTCCTCCATCATCACCCTGCTGTTCGAGGGCCAGCTACGCTACGTCACACAGGGCCTGCACTGTGACCACCAGACCCAGAGCAGCCAGGTGTTCACCATGCTGTCCCTGCCCATCCCCAATGGATCAAAGAAGTGCTCCCTGCAGGACTGCTTGGCGCTCTTCTTCCAACAAAACACCTTGACCAGCAGCAATCAGATTCTGTGCTCGCAGTGTGGGATAAAACAGGACACGGCCATCCTCACCACCCTGGACAGCCCCCCCACAATCCTTATCCTGCACCTCAAACGTTTTGAATGtcaaggaaagaagaaaaagaaactgaagacCAACGTGTCTTTCTCCATGGAAAACCTGGACCTTTCCCCTTATGTGTCCCCCTCCTCTTCGAAGCACAAAACATACTGGCTGTATGCTGTAATAaacCACAGCGGGGATCTGAATGCCGGGCACTACACTGCCTGCTGCCGAAACCCGCTCACTCAGAGGTGGCACAACTATGATGATGCGACGGTCTCTGAAATCCCAGACTACCTCATCCAGTCGTCCAGTGCCTACATCCTCCTGTACAGCTGCCAAGAGATCCGGAAGCCCTGCGTTCCAGGCCTGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007556 True 1947 mRNA 0.54 7 22268514 22274179

Neighbor

gene id symbol gene type direction distance location
AMCG00007557 trpm7 coding upstream 6661 22232527 ~ 22261853 (+)
AMCG00007555 NA coding upstream 52274 22204776 ~ 22216240 (+)
AMCG00007549 sqrdl,LOC102778185,LOC103363827 coding upstream 93759 22162204 ~ 22174755 (+)
AMCG00007546 bloc1s6 coding upstream 109965 22153677 ~ 22158549 (+)
AMCG00007548 NA coding upstream 139037 22123647 ~ 22129477 (+)
AMCG00007560 gabpb1 coding downstream 21875 22296054 ~ 22307259 (+)
AMCG00007559 NA coding downstream 48545 22322724 ~ 22331465 (+)
AMCG00007561 gatm,LOC106595761 coding downstream 79433 22353612 ~ 22364194 (+)
AMCG00007562 pde8a,LOC100690151,LOC102210709,LOC105889152,LOC101463592 coding downstream 134749 22408928 ~ 22431845 (+)
AMCG00007563 LOC106587918,LOC106592744,LOC104942123 coding downstream 167816 22441995 ~ 22448954 (+)
G24570 NA non-coding upstream 120276 22144839 ~ 22148238 (+)
G24384 NA non-coding upstream 870467 21386225 ~ 21398047 (+)
G24311 NA non-coding upstream 1387590 20880546 ~ 20880924 (+)
G24310 NA non-coding upstream 1391729 20876584 ~ 20876785 (+)
G24256 NA non-coding upstream 1774509 20492904 ~ 20494005 (+)
G24654 NA non-coding downstream 66557 22340736 ~ 22343616 (+)
G24692 NA non-coding downstream 175928 22450107 ~ 22450404 (+)
G24693 NA non-coding downstream 179637 22453816 ~ 22454055 (+)
G24695 NA non-coding downstream 181087 22455266 ~ 22456761 (+)
G24698 NA non-coding downstream 184841 22459020 ~ 22459517 (+)
AMCG00007553 NA other upstream 2105 22263520 ~ 22266409 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other upstream 64563 22189245 ~ 22203951 (+)
AMCG00007547 clg23h15orf48,clg1h15orf48,c13h15orf48 other upstream 133800 22131573 ~ 22134714 (+)
AMCG00007514 arpp19,LOC103358163,LOC105892485,LOC107740885,LOC107569706 other upstream 1201731 21060159 ~ 21066783 (+)
AMCG00007483 NA other upstream 2317086 19939170 ~ 19951428 (+)
G24606 NA other downstream 7521 22281700 ~ 22282958 (+)
AMCG00007585 star5,stard5,LOC104953929 other downstream 859632 23133811 ~ 23139521 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other downstream 915281 23189460 ~ 23193521 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other downstream 1383671 23657850 ~ 23670079 (+)
AMCG00007631 NA other downstream 1918042 24192221 ~ 24194481 (+)

Expression


Co-expression Network