AMCG00007560 (gabpb1)


Basic Information

Item Value
gene id AMCG00007560
gene name gabpb1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22296054 ~ 22307259 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007560
ATGTCCCTGGTGGATTTGGGTAAAAAGCTGCTGGAGGCGGCGCGCGCAGGTCAAGACGATGAAGTGCGAATTCTGATGGCTAATGGAGCACCTTTCACTACGGACTGGCTTGGAACCTCCCCCCTGCACCTCTCAGCTCAGTATGGGCATTACTCCACTACAGAGGTCCTGCTGAGGGCCGGAGTGAGCCGGGACGCCAGGACTAAAGTGGACAGAACTCCTTTACACATGGCTGCCTCTGAGGGCCACGCTCGGATTGTGGAGGTCTTACTCAAGCATGGGGCTGACGTCAATGCAAAGGACATGCTTAAAATGACAGCACTTCACTGGGCAACAGAGCACAGCCACAGGGAGGTGGTGGAACTCTTAATAAAGTATGGCGCTGATGTTCATGTGCAGAGTAAGTTCTGCAAGAACGCACTGGACATTGCGATTGACAATGCAAATGAAGAACTAGCAGAAATTCTTCAGGTGTCCATGCagaaccaaataaatacaaacccaGAAAGTCCAGACACTGTAACGATACACGCAGCGACGCCCCAGTTCATAATCGGCCCAGGAGGAGTGGTCAATCTAACCGGCCTGGTTTCAGCTGCAAACTCATCCAAATCAGTAGTTGCAACGGAAGAAGTGGTCACCGCAGACTCGGTGGATGGGGCCATTCAGCAGGTGGTCAGCTCTGGAGGGCAGCAAGTGATCACCATAGTGACAGACGGCATCCAGCTGGGGAACCTGCAGACAGCCAGTGGTATTGGGCAGCCAATCATAGTCACGATGCCAGACGGCCAGCAAGTTCTGACAGTGCCTGCCACAGACATTGCAGAAGAGACGGTCATCAGCGAAGAACCAACCATGAAAAGGCAACGCATTGAAATAATCGAAAATCATGTGGAAAATACAGAAATCGAAGAGAAGGAAGCTCTACAGAAACAGCTAGAGGAGGCTAATCGTGAAGCCCAGAAATATCGTCAGCAGCTCCTGAAGAAGGAGCAGGAGGCCGAGGCATACAGGCAGAAACTGGAGGCCATCACGCGTCACCACAGTAATAAAAAAGCG

Function

symbol description
gabpb1 Predicted to enable transcription cis-regulatory region binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human GABPB1 (GA binding protein transcription factor subunit beta 1).

NR:

description
PREDICTED: GA-binding protein subunit beta-1

GO: NA

KEGG:

id description
K09454 GABPB; GA-binding protein transcription factor, beta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007560 True 1059 mRNA 0.52 7 22296054 22307259

Neighbor

gene id symbol gene type direction distance location
AMCG00007556 NA coding upstream 21875 22268514 ~ 22274179 (+)
AMCG00007557 trpm7 coding upstream 34201 22232527 ~ 22261853 (+)
AMCG00007555 NA coding upstream 79814 22204776 ~ 22216240 (+)
AMCG00007549 sqrdl,LOC102778185,LOC103363827 coding upstream 121299 22162204 ~ 22174755 (+)
AMCG00007546 bloc1s6 coding upstream 137505 22153677 ~ 22158549 (+)
AMCG00007559 NA coding downstream 15465 22322724 ~ 22331465 (+)
AMCG00007561 gatm,LOC106595761 coding downstream 46353 22353612 ~ 22364194 (+)
AMCG00007562 pde8a,LOC100690151,LOC102210709,LOC105889152,LOC101463592 coding downstream 101669 22408928 ~ 22431845 (+)
AMCG00007563 LOC106587918,LOC106592744,LOC104942123 coding downstream 134736 22441995 ~ 22448954 (+)
AMCG00007569 NA coding downstream 155847 22463106 ~ 22474401 (+)
G24570 NA non-coding upstream 147816 22144839 ~ 22148238 (+)
G24384 NA non-coding upstream 898007 21386225 ~ 21398047 (+)
G24311 NA non-coding upstream 1415130 20880546 ~ 20880924 (+)
G24310 NA non-coding upstream 1419269 20876584 ~ 20876785 (+)
G24256 NA non-coding upstream 1802049 20492904 ~ 20494005 (+)
G24654 NA non-coding downstream 33477 22340736 ~ 22343616 (+)
G24692 NA non-coding downstream 142848 22450107 ~ 22450404 (+)
G24693 NA non-coding downstream 146557 22453816 ~ 22454055 (+)
G24695 NA non-coding downstream 148007 22455266 ~ 22456761 (+)
G24698 NA non-coding downstream 151761 22459020 ~ 22459517 (+)
G24606 NA other upstream 13096 22281700 ~ 22282958 (+)
AMCG00007553 NA other upstream 29645 22263520 ~ 22266409 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other upstream 92103 22189245 ~ 22203951 (+)
AMCG00007547 clg23h15orf48,clg1h15orf48,c13h15orf48 other upstream 161340 22131573 ~ 22134714 (+)
AMCG00007514 arpp19,LOC103358163,LOC105892485,LOC107740885,LOC107569706 other upstream 1229271 21060159 ~ 21066783 (+)
AMCG00007585 star5,stard5,LOC104953929 other downstream 826552 23133811 ~ 23139521 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other downstream 882201 23189460 ~ 23193521 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other downstream 1350591 23657850 ~ 23670079 (+)
AMCG00007631 NA other downstream 1884962 24192221 ~ 24194481 (+)
AMCG00007640 NA other downstream 2169228 24476487 ~ 24499650 (+)

Expression


Co-expression Network