AMCG00007565 (gatm)


Basic Information

Item Value
gene id AMCG00007565
gene name gatm
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22340599 ~ 22358446 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007565
ATGGAAAACCAGCAAACACTGGTGTCCTCAGGACTGGGTTTACAAGGTCCCGTCATAGGCAATGTGCAAGGTTCCTACAACTCTCACCTGACTCCTTTGTACAAAGATATCACGTCCAGCTCGAATGAAGTCTGCAGCATCGAAGCACGGCTCATATTCCGTGTGGTAGCCGGAGTGGCTATTGTGCCACTTCTTCTGCAGTCTCTTTTCCCTTACTTTGTGCAAGATTGCCTCTACATGGCGAATTTAGTACGGATTATGACAAGATTTGTCATGCGTGGAAGAAGAAAAcctgtgtttttggttttgaataGGTTTTTGGAGCAGGTACATAAGCATCCTGATAAACCCTTTATCGTGTTTGAGAATAAGACATATTCTTACAAGGAATCGGATGAAAGGAGCAATAGGTTTGCCAGGGCTTTACAGACGCATGCTGGTCTGAAGGCGGGAGACACGGTGGCATTATATATGGGAAACGAGCCTGCGTTTCTTTTCACCTGGCTGGCTCTGGCTAAACTAGGGTGCCCGGCTGCACTGCTTAATTACAATATCAGAGCAAAATCCTTGTTGCATTGCTTTGGTTGTTGTAATGCAAAAGTTCTAATAGCAGCTGCAGagctgaaaGATGCCGTGGAGGATGTGCTACCTTCCCTCAGAGAGAAGAGGGTATCTGTGTTTATCATCAGTGCACAGTGTAACACACCCGGCATTGAATCTTTTGTGGACAAGATTAATGAAGCCTCTGAGCAGCCTCTACCACAATCTGTGAGATCAAAAATTACCATTAAAAGCCCAGCTGTTTACATCTACACATCTGGAACGACTGGTTCAACCATAATTTTGAGGCAAAAGTTTTCAGCCTCTCAATTCTGGGATGACTGCAGGAAGCACAATGTCACAGTGATTCAGTACATTGGAGAGGTGATGCGCTACCTGTGCAACACGCCAAAGAGAGACAATGACCGAGATCACAAAGTGAGAATTGCAATTGGCAATGGTCTCAGGGCAGATGTTTGGAAAGACTTCCTGAAAAGGTTTGGAGACATTCGAATCACTGAGTTTTATGGAGCCACTGAAGCGAATATTGGCTTTGTGAACTACGTAGGGAAGATTGGTGCCATTGGACGGGTTAACTTTGTACAAAGGAAACTATTCCCATATTCTCTGCTTAAATATGACATTGAGAGAGAAGAGCCAGTGAGGGATTCCAGAGGGTTTTGTGTGGAAGCTGCCAAAGGTGAGACTGGTCTTTTAGTATCAAAGATCACCAAAATTGCTCCTTTTGCTGGATATGCCAAAAACCAACAGCAAACGGACAAGAAGAGATTGAGGGATGTCTTTATGAAAGGAGACCTGTATTACAATAGTGGAGACTTGCTAAGGATTGACCAGGACAACTTCATCTATTTTCAAGACAGGGTTGGAGACACCTTCAGGTGGAAAGGTGAGAATGTGGCCACAACAGAGGTTGCTGATGTCTTTACAATGGTGGACTGTATTGAAGAAGCCAATGTATATGGAGTTAAAGTACAAGGGCATGAAGGAAGAATAGGAATGGCTTCTGTTAcattaaagaaggaaaaacaatttGAGTGTGACAAAATATATAGCCATATTGTCAACTACATACCAAGTTATGCAAGACCACGTTTTGTAAGAGTTCAGAACGCCCTGGAGGTTACTGGGACATTCAAACAGATGAAAGTGAAACTAGTAGAAGAGGGCTTCAATCCTGTTCTTGTTCAGGATCCCCTCTACTTCCTGGATGAAAGCAAGAAGAGCTATGTACCAATGACTGAGGAGATTCATGCCTCTATTCTTTCAAATACCATCAAGCTGTGAAAATGAGCTTGCTGAATACCTCCTTTATATCAGACAATGGACAATTAATGTTGTGGAATGTATGATTGATGTGTAATTTAGGAAGTATGGATAGGGTGTATGACTGTACCAGTATTCAGGCACTCGTGAGATGGTGGATCAGTTCACCAGGCCATCCCATATCTAAAATGATTCTAAGACAGAAGCTCACACCTGGTGAGTGGTTTGGTAACAATAGGAAACACATTTCTACAGCCCGAGAAGAATAAGGGGTTATTTTGCAGTAGTTCAAGTTATTCAGTATGCCCTGAAGAGCACTGTTGTGTAGATAATGTCTTAGGTGACAGTTCTTACATTGAGCCATAGGAAAAacgcaaattaaaataaacaaataaaacatcttaGTCTAAACACAATGATGAACAATTTCTACTATTTTGTAAAGGATaattattgcttattttatttactaaaaatgaaatgtgattaattgtgaGTTTCTATGTATAATTTTAGACAATTTTTTATGGTGGTGGTCTATAACTGTGGTTAACAATGCAAAGAAAGGAAGTACAGAATgatgaaaaaacaatgtatctGCGGTTTGGATTAaacacattcaataaaaaaatatccaatgggatttgtacatttcaaaaataaagactgaaCAAAGGGAACTatgcaaaaatgtacatttctgtaaGAATTGCATGTTGATCCCATTATGCGAGAACAAATAAGgaagaaattatgaaaatgcaaatccACTCCAACATTA
>TU30958
CCCTGATGGCCGGCGAGAGGcttcctccagagggaagaccacagccagcagtaccgataaagaactttctgatctccatgctgctgtaataactatactgcctggaggggaggcaaccattaggcctaggcccaaagccgtggacccccagagattaattttctcctacatgccatccataggagtttttggtttttctctcctccatgcctaaatgatttatttatttatttcatgtaaaatgtttacaggtctatatttattttactttattgtatttatgtattattttattttgctgtacgtttgttgcacgttttccagtctgtaaagcactctgtggctactctgcgaagggcgctatacaaataaaaattgattgattgattcaagTCACCTGCAGTGAGTACTGCTAACAGAATTGGAACAAGGCAAAGGCATAAAACAGGCAGACTTCAGACACTTTACTGCCTTTTCCTGCTGGTAAAACACATGGATTGGAGCAGACAGTATTTCAGAGTGCAATGGAAGCCGGTCACCATATAGCACATTGGACAGCTCATGATGATTGCTGAGACTTTATGCTTGCCATAGTCCTAGAGGACCGTAGAGGTGAATGAAAGGAGCATGGAGGTGCGAGGCTGAGGGACAAGCCAGAATGAAACCCAGAAGAGACTGGACAGAAATAATGATGGGCTGGACCAGCTGGGCAATGAATCACATGATGAGGAAAAAACAGATGTCTACACTGAACAAATATCACAGAAATTATTGACATGGCACAGGTGGGGAGGCTTAATACAGCTGTTCAAGGGAACACTAGAAGCATTGAATTGACTGCTACACAGGAAACTGAAACTCACTATCAATGAAACAGAAGGCGGGAACTATCCTTTCTAATCTGTAGGCTAAGGGTGGATTTACAACCCTACACTGCCAACAGCTGTCTTTCTGTGACTTGCAAGAAGCTAAAAAGATCTAcataagcaaattatttaaCAAAGGGTTCAGGTACTTAAGTGAGGAGTCAACCACAATGGAAAACCAGCAAACACTGGTGTCCTCAGGACTGGGTTTACAAGGTCCCGTCATAGGCAATGTGCAAGGTTCCTACAACTCTCACCTGACTCCTTTGTACAAAGATATCACGTCCAGCTCGAATGAAGTCTGCAGCATCGAAGCACGGCTCATATTCCGTGGTGACAAACTTCCCTTCAGCAGCCAGTTTATGCCTGTCTTCTACAGTGCGGATAGGGTATTCCTGGTCGTATAAATCATTGGCCATGGTTGGTTTTGGAGCAGTAGTCCACTTTGCACCTTGTTTGAAGTATTCTTTAATGAGAGGCCGGTAAGCTCTGTATTCAAAGAAGCGAGATCGCCAGGCCATCGGGGCTTCAATGATCTCATTCCCCACAATAAGGAGGATGTCTCTCGGCATGGCAGCATACATACCTGTGGATGTAAAGTCAGGGGTTTTATAGACAACAGACCAGTCAATGGGTTCTGGTCTCCTGACAGTAACTCCCTCCAGACGTAGAATATTGCACATTTCCTCTATCTCAGTAACGGCCTTCTTCAAGTGATCCTCAGGAAAGCTCTGACCGCCATGCTTCTGGTAAAATGGCCAGTACTTCTCATAGGTGTTAG

Function

symbol description
gatm Predicted to enable glycine amidinotransferase activity. Predicted to be involved in creatine biosynthetic process. Predicted to be located in mitochondrial inner membrane. Predicted to be active in mitochondrion. Is expressed in several structures, including digestive system; mesoderm; musculature system; ovary; and yolk syncytial layer. Human ortholog(s) of this gene implicated in AGAT deficiency and Fanconi renotubular syndrome 1. Orthologous to human GATM (glycine amidinotransferase).

GO: NA

KEGG:

id description
K08746 SLC27A2, FACVL1, FATP2; solute carrier family 27 (fatty acid transporter), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007565 True 2605 mRNA 0.40 10 22340599 22357410
TU30958 False 1647 lncRNA 0.45 3 22355450 22358446

Neighbor

gene id symbol gene type direction distance location
AMCG00007566 NA coding downstream 3525 22332066 ~ 22337074 (-)
AMCG00007558 usp8,LOC102785891 coding downstream 52363 22276111 ~ 22288236 (-)
AMCG00007552 LOC100693649,LOC108251187,LOC102204817,LOC101075467,LOC105022653 coding downstream 159478 22177466 ~ 22181121 (-)
AMCG00007550 NA coding downstream 187099 22144749 ~ 22153500 (-)
AMCG00007551 atp8b4,LOC107688930,LOC107712521 coding downstream 222497 22069642 ~ 22118102 (-)
AMCG00007564 NA coding upstream 90839 22449285 ~ 22470431 (-)
AMCG00007571 NA coding upstream 116964 22475410 ~ 22487415 (-)
AMCG00007573 NA coding upstream 174210 22532656 ~ 22535178 (-)
AMCG00007574 btbd1,LOC106562729 coding upstream 187088 22545534 ~ 22551557 (-)
AMCG00007576 bnc1,LOC106591559 coding upstream 225283 22583729 ~ 22618108 (-)
G24640 NA non-coding downstream 78106 22260847 ~ 22262493 (-)
G24579 NA non-coding downstream 206618 22131389 ~ 22133981 (-)
G24551 NA non-coding downstream 331166 22005734 ~ 22009433 (-)
G24515 NA non-coding downstream 396928 21942952 ~ 21943671 (-)
G24503 NA non-coding downstream 533538 21806120 ~ 21807061 (-)
G24687 NA non-coding upstream 73621 22432067 ~ 22432313 (-)
G24705 LOC105889120 non-coding upstream 87924 22446370 ~ 22448954 (-)
G24721 NA non-coding upstream 159976 22518422 ~ 22521084 (-)
G24797 NA non-coding upstream 595639 22954085 ~ 22954844 (-)
G24800 NA non-coding upstream 687667 23046113 ~ 23046373 (-)
AMCG00007500 NA other downstream 1867680 20462504 ~ 20472919 (-)
G24217 NA other downstream 2008788 20331513 ~ 20331811 (-)
AMCG00007494 NA other downstream 2118595 20171329 ~ 20222004 (-)
AMCG00007487 NA other downstream 2417446 19915146 ~ 19923153 (-)
AMCG00007481 fam63b,LOC107750498 other downstream 2540847 19791701 ~ 19799752 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other upstream 203050 22561496 ~ 22576454 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other upstream 1048482 23406928 ~ 23420303 (-)
G25026 NA other upstream 1613225 23971671 ~ 23972665 (-)
AMCG00007637 NA other upstream 1904244 24262690 ~ 24281564 (-)
G25422 NA other upstream 2905886 25264332 ~ 25264951 (-)

Expression


Co-expression Network