AMCG00007568 (tm6sf1)


Basic Information

Item Value
gene id AMCG00007568
gene name tm6sf1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22552690 ~ 22560767 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007568
gcagatctgcgcagagctgcgggaatctgcgcgaCGAGAACGCGACGTACGGCTTGATCTCCGCCTGGTTTCGATGCCTCAGGAAACCATTGGTTAATGCGATAGTGAGTGCGCTGTTAACACCGCTGCTCGTCCTATTTCTTTTTGCAGTTTCGTTCCAGATCCATGAAGTTCACTGCCGTAAACCCGTTCTTTATGCTCTGAAGacttaaattaacatttagtgGCTATATTATAAGTCAGCTCGACATCTTACTAACATCCTTGCTTTGTGAAGGAGGCAGTGCAGCTGCACACCAGTCTCCTCGCATGCAACAATTGGAAAGCGCACtgttcacagacacacatcgTCCACCTTTGAATGATCATCAATATTAATACTTCCATTAATGGACGACTAGGAAGTCATCTGTCTCACAAATACGGAAGTTTAAATATCTGCTATGAACGCTTCAGCTGGAACCGGAGTTTTTGTGTTGACTTTGCTGTCAATACCTATCACCTATCTGTTTAACTTTTTAATCCACACAAACAGCACTGGAGCGGTCATTGTGGCTGTTGCATTGATCTTGCTCGTCATTGCTGTCCTGGCACGCATTCTGCTAAAAAGAAGTGCACCAAAAGATCCTCTTTTTTATGTTTATGCTGTGTTGGCGTTTATGAGTGTAGTGAACCTAATTATAGGACTGGAGCAGGATGGAATCATAGATGGATTCATGACCTTTTACTTAAAAGAGGGGGAGCCTTACATGAACACAGCTCATGGACATATGATATGCTACTGGGATGGCTGTGCACACTATCTCATGTATTTGGTCATGGTGGCAGCGATAACCTGGGGGGAGAGCTACAGAGCAATGGGCCTGTATTGGATGGGGTCCTTTCTAATGCGTTTAATAGTCTACATACCTGGAAATGTAGTTGgtaaggaaacaaaacaaggaaattgaAACCCTTGACATGCCAGATAGTGCTTCAGAAAAACTCCCACTTACAGAAGCAGAATTTAGGGATGGTAAATAACTGCAGATCCCAGCTGCTGACTgtgcaaaatgtgtgaaaaccataatttaattatttcctgttcaaaataataatggccTTATTAGTCAAATCCACCAAACTAGATTAGACATCATAAGACAACATTGTATAATGGTTCAGCATGGAATATATCATTAGTATTGGTATTCAATTCATATTTCACAAAGTTAAATACATAGGAGACATTAAATAACGATAAATATCAAGCTTTACACTTCCCCTAAAATGAGGgaggttattaaaaaaaggtgTTAAAGCTGTAGCCAGGCAGTCTAATGCTGTTTTATGGATATTCTCTGGAATATGTATTCTCTGTTACATGCTTATGGACATACAGTATGCATCATCAGTGCTTTCTGGGTCAGGAGAGGCAAATCTTTTGGCTTTCTTTCTAGGGAAATATGGAACACAGCTGCGGCCTTCTTTCATTATGAATGCACCGCATATAATTGTGTCGGTGTGGGCATGCTTTCGGATCGCCAGTCAGCCACCTGCAAGAGAAGCCTCGcctatgggCATTCAGGAAGACCACAGGAAAAGACTGGTGCAGAGACCCTTGGATCTACTCTTCACCCTCTATCTCATTCCTGCCACAGCCTTCTGTATCTTTAGGGGCCTGGTGGTGCTGGATTGCCCCGCTGAAATGTGTCAGAAGTATGTGCAGGACTATGAGCCGTACCTTAGAGATCCTACAGCCTATCCCAGAATTCAGATGCTGGTAAACATGCTGTACTCTGTCCCGTATTACACTGTAACCCTCTATGGTCTGGTGGTTCCTGGCTGCAGCTGGATCCCTGACTTGGCACTAGTGCATGCTGGGGCAGTGGCACAGGCTCAGTTCGCCCACATTGGGGCCTCCCTGCACACTAGGACGCCTTTTACATACAGAGTTCCCGAGGAAGCAAAAGCACTCTTTCTATTCATCAATATCCTTTATGGGGCTGTACCCCAGCTCTTCAGCTACAGATGTATCAGCAGTCCCGAGTTCTTCCTTACACCcaaagagaataaaaaagatgaataaTGTAAAgggtgtatatattaaaataaataaataaagcaaacctGTATTTCCAAGCTTCTGGCAAGAGAACTTGAAGCAACATAggacaatattgtatttaacattCCTTTACACTTAAAGGAAAAGACATTGCGAATTCATAATTGAGTTCCTAtgccttattatttttttcttttaacgttcttacatttcttctttgtttttggttcttgatttttattgtaaaaggtTTATTTCCATGAAGAATGTCCTTGTTTACTTAGACATGGTACTCTGGGAACAGTGTTATATGTATCTCCACCCAGCAAATATTGCCAAAAAGCAGTATGCTTTGTGTAGGTACTATGGTGCTTAGAATATAGTAAGCTGTAACATTTAGGTGCCTTAAACTGTGAGCAGAATGTCTAAGTGATAACtacaaatgtgtaaatacaatgaataaagtgatttttcttttttcta

Function

symbol description
tm6sf1 Predicted to be integral component of membrane. Predicted to be active in lysosomal membrane.

NR:

description
PREDICTED: transmembrane 6 superfamily member 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007568 True 2530 mRNA 0.41 9 22552690 22560767

Neighbor

gene id symbol gene type direction distance location
AMCG00007570 NA coding upstream 3281 22536885 ~ 22549409 (+)
AMCG00007567 NA coding upstream 32403 22518496 ~ 22520287 (+)
AMCG00007569 NA coding upstream 78289 22463106 ~ 22474401 (+)
AMCG00007563 LOC106587918,LOC106592744,LOC104942123 coding upstream 103736 22441995 ~ 22448954 (+)
AMCG00007562 pde8a,LOC100690151,LOC102210709,LOC105889152,LOC101463592 coding upstream 120845 22408928 ~ 22431845 (+)
AMCG00007575 NA coding downstream 116279 22677046 ~ 22685708 (+)
AMCG00007577 NA coding downstream 130586 22691353 ~ 22697421 (+)
AMCG00007582 NA coding downstream 230126 22790893 ~ 22852795 (+)
AMCG00007583 efl1,LOC102798863 coding downstream 296748 22857515 ~ 22879252 (+)
AMCG00007581 LOC106562675,LOC102798863 coding downstream 345691 22906458 ~ 22920751 (+)
G24701 NA non-coding upstream 90138 22462124 ~ 22462552 (+)
G24700 NA non-coding upstream 91227 22460469 ~ 22461463 (+)
G24699 NA non-coding upstream 92377 22459884 ~ 22460313 (+)
G24698 NA non-coding upstream 93173 22459020 ~ 22459517 (+)
G24695 NA non-coding upstream 95929 22455266 ~ 22456761 (+)
G24742 NA non-coding downstream 20702 22581469 ~ 22583154 (+)
G24793 NA non-coding downstream 392842 22953609 ~ 22954842 (+)
G24856 NA non-coding downstream 721921 23282688 ~ 23285015 (+)
G24897 NA non-coding downstream 845192 23405959 ~ 23406837 (+)
G24898 NA non-coding downstream 846217 23406984 ~ 23425440 (+)
G24606 NA other upstream 269732 22281700 ~ 22282958 (+)
AMCG00007553 NA other upstream 286281 22263520 ~ 22266409 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other upstream 348739 22189245 ~ 22203951 (+)
AMCG00007547 clg23h15orf48,clg1h15orf48,c13h15orf48 other upstream 417976 22131573 ~ 22134714 (+)
AMCG00007514 arpp19,LOC103358163,LOC105892485,LOC107740885,LOC107569706 other upstream 1485907 21060159 ~ 21066783 (+)
AMCG00007585 star5,stard5,LOC104953929 other downstream 573044 23133811 ~ 23139521 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other downstream 628693 23189460 ~ 23193521 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other downstream 1097083 23657850 ~ 23670079 (+)
AMCG00007631 NA other downstream 1631454 24192221 ~ 24194481 (+)
AMCG00007640 NA other downstream 1915720 24476487 ~ 24499650 (+)

Expression


Co-expression Network