AMCG00007569


Basic Information

Item Value
gene id AMCG00007569
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22463106 ~ 22474401 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007569
TGAGCTCGAGACAGTGACGTATTGCAAATGGCGGACGGTGTAAACAACAGCCAGAAGGCTCcgaaaaataatgaattcagGCTAAATGTACGGTTTGTATAAACATTACGACCATGGATTGCGAACGCATGGACAGTCTGGACGGGTGGGTGGCCATCAAAAGCAACGCCTTTGAAGAAAACGAGACTTTTAAGCTGGGCTTCATCGTGCAGTGGAATGTAATCGAGTGCAAGTTTGCTGTCACCTGTCACAACCGGACCCTGCAGAGGCAGAAGCGAAAGCAAGAGCTCGGGCTAGCCGACACCGAGACCAGCTGGGCCGGCCTGTACTCGGTGACTGATCTCAGAAATGTTCACCGGCAGTTGACCGGGGTCGGTGACGTCTTGGAGCCGTATTTTCCCAACTTGAGTGACTTGGAAGGGGGAAACCTATGGGACCTGTTATTCCTGAACAGGACCTCCAGCCTAGACGACCCCGAGAAAGACCTGGACACGCCGTGCCGGCAGCTGGAGAAGTACTTCAGCACCGCGGTGGATGTGTGCGGCCGCAAGATCGTGCTGGACTCGCTGTTCGTGCAGGATGTGCGGGACGTGGAAGAGTACTTCGAAAACCTACACGAgttcaaaaagaaaaccatgGAGGATCAGGTGATCAGAGCCAAAGAAACCCTCAGAGAGGTACTCCAACAACATAAATCTGCTGACAAGATGGTTCTCCTATTAAAGATTTATGATGAAGAAGATGAGGCTTATAAAGAATTAGTTACCGTAGCAACGCAGTTCTACCAATACCTGCTGCAGCCTTTCAGAGACATGAGGGAACTAGCGATGCTGTATAAAATGGAGATCATGAAATCCCTGGAATTTGATGATTTAGGTCCAAAAAGAATTGCCGCCCTGGAGAAAGAGGCCGAAGATTGGAGGATGCGAGCAGAAGACGCTGTACGCTCCATCCAGGATATCACTGTGAATTACTTTGTAGAAACTGCTAAAGCACTTGCGGGGATTTTGAAGCACATGGAGGAGGATAAGAAGAAGTTTGGCCCTGCTTCCTGGGCCTCGGCTGCCCCCAGACTGGAAAAGCTGAAGTTCATGTTGGCCAAGGAGACACTGCAGCATATGAGGGCCAAAGAAATGTGCCTGAACCGCAAGAAAGAGGATATCCGGAACAGTATGGGAAGTCTTGCTGATCAAAGGGACAGCATGGAAGCAGTTGATGAATTAGAAATGCAGTATTATGAAGCTCAGCTGGAATTATATGATGTGAAGTTTGAAATTCTGAAGAACGAGGAACTGCTGCTACTGGCTCAGATAGACACCGTGCGAAGACAGATTAAAGAACTGAAGGAGGAGGTGGTCTACTATGACACGTGTGAGAACCCAGAGGAGCTGCAGATGGAGGAGGCAGGGAGGCTGAGGGACAGCAGCTCTCCTGCCATGAAGAGCCTGTGTCGCCGGCTGCAACAATTGGAGACAAAGAGAGGGAGCATCTGTGCCAGAAGGGCATACCTGCGAAACAAGAAGGACCAGTGTATGGACGCAAATGAGCAGAAGCACAAGCAGGCCCAGCAGAGCACCGAGCGATTCCTTCATCACCACAGTGTCCAACTGAAAAGAGAACAGAAGAAGGAAGAGGATAAACAGAGGAAGGAGTGGGTGGATCAGGAGCGAGAAAGGACTCTGAACCGACTCAAAGCCTTTAGAGAGAAGAGGCAGGGACAGCTGGTGTTAAAAGCACCAAGGTCCCAGCCTGCTGCTAGAACCGTGCCTCCCCCGGAGCCCTCCCAGCCCATGTCCATCATCAGCCTCACACCATCTCCTGAGGGCCCCGGTGCCGGCGTGCCATCGAAAAAGAAGAGcccaaagaagaagaaagacaacATCCCTGTTCAGATCTTCCTTCCGCCGGGGTCAGCAGGGGCCTCCAGTCCCCCGCCACCCCCTCTGCCGCCCCTCGcgccccctctccctccaccgCCTCCTCCCCCGCCCCTCCCCGCCCTGCCCACCAGTACGCCTCCCTCAGCCGACCTCACCTTGGAGCTGCTGGACAAGCCCATGCCCCTGAGGAACCAGAAACAGGCTTCGCCTTTTCCagcaaaaaatactttgaagCAGAATATAGGATCGATGGATGAAGTGCTGGCCTCTTTACAGAGAGGGCATATTCTGCTGCGGAAAGTCGAGTCACCTGCCCAGCCTTTGACTAACAGTCCTGACAACGTCCGAGACAGCATGCTGTCCGCCATCAGACAGGGTGTGAAGCTGAAGAAGGTGCAGCACGTGTCCGAAGCCAGAGAAGACCAGGGCTCGGACCTGGAGCGCAGCATCAAGGCCGCCATGCAGAGGATGAAGAAAGTCTCCTCCGAGTCCGATGATGAGGAGCGAGGGGAGGTGCAGTCAGCTGACTGGGACAGTTAGGCCCCCTGCCTGCCCTCAGCAACAGGGACTGGGGGCTACACATAGCTCCCCACTGTGTCCAgtgtcatttgtgtgtgtgtgtttttaagtttttaagtcTGAAGTTTTGTCTTGTGCTAATTGGTTTCAATTCGCAAAGGTTTTCTGACCTGTCCGAACATTATTATATTGCTCTGCAGAAGCTGGGCATGCAATATTAAATCCTTGGCTGTGCATTAATATTCcttcttcatttaaatgcaattaaccaTGAAAAGagcagatttaattttttaagcaaatgagctaatgcatatttattttatttagtacaaTACAGCTGCTCTTTTGACATTGTTGCCAATGAAGTAGAAGATTGCAATCATGcaatcaaaaaaaataaaataacatgaggTAGAGGTGTTTATTGCTCTCTCCCAGACTTTGGTCTCTAAAATTGCCAGCTCCACAAATGTGATCAGGCTGCCTTTGGCTTACTGACCTTGGCCATAGTACAATGATCCTAATAAGGAAATGGTGTTATATAATGGGTTCTAGGTTTGCTAGTTATTTCAGTTAATCATcactctttttttattattgtttttctgtgataCATTGTTTATATAAACCACTTGCACCTACAGAAAACTAATTTATCCAGAGAGGCGGGGGAATAAAAAGGCTGATTTGAATTTTGAAACATGTTTCAGAAACTGACTTTGGAAAGAAACCGGATCCACAAAACTTTTGCACTGAATCAGCtttttcagcttttgttttaaacagctgAATTGTCATGCCTTTTCAGGGTCTGTTCAGATGTAGTTCCTGTAAACATTAAACCTGCAAAAGTGCCTTGAGTGTTGTGTCGATGAATCcttattatcatcatttatttattgatatgatTTGTGAGCTGTAGTTTTAATAGTTGCTTGTAATGTAGTCAAGTATTAGAAACACAAAGTCAGTCCTCAAAGACCAGACTTTCACTTGTGCTCAGCTAACTGACTTGATACACAGTTTGTCATATATAAGCTTTTCAGAAGTCTTTGCAGTAAGTTGCTGAACTTGCTACCACCCCTACAGGTGTTCTTAGCAGTGCCATCTTGTGGCTGAAAAGATCACAATGTACCTCTGAT

Function

GO: NA

KEGG:

id description
K20479 WHAMM; WASP homolog-associated protein with actin, membranes and microtubules

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007569 True 3544 mRNA 0.48 10 22463106 22474401

Neighbor

gene id symbol gene type direction distance location
AMCG00007563 LOC106587918,LOC106592744,LOC104942123 coding upstream 14152 22441995 ~ 22448954 (+)
AMCG00007562 pde8a,LOC100690151,LOC102210709,LOC105889152,LOC101463592 coding upstream 31261 22408928 ~ 22431845 (+)
AMCG00007561 gatm,LOC106595761 coding upstream 98912 22353612 ~ 22364194 (+)
AMCG00007559 NA coding upstream 131641 22322724 ~ 22331465 (+)
AMCG00007560 gabpb1 coding upstream 155847 22296054 ~ 22307259 (+)
AMCG00007567 NA coding downstream 44095 22518496 ~ 22520287 (+)
AMCG00007570 NA coding downstream 62484 22536885 ~ 22549409 (+)
AMCG00007568 tm6sf1 coding downstream 78289 22552690 ~ 22560767 (+)
AMCG00007575 NA coding downstream 202645 22677046 ~ 22685708 (+)
AMCG00007577 NA coding downstream 216952 22691353 ~ 22697421 (+)
G24701 NA non-coding upstream 554 22462124 ~ 22462552 (+)
G24700 NA non-coding upstream 1643 22460469 ~ 22461463 (+)
G24699 NA non-coding upstream 2793 22459884 ~ 22460313 (+)
G24698 NA non-coding upstream 3589 22459020 ~ 22459517 (+)
G24695 NA non-coding upstream 6345 22455266 ~ 22456761 (+)
G24742 NA non-coding downstream 107068 22581469 ~ 22583154 (+)
G24793 NA non-coding downstream 479208 22953609 ~ 22954842 (+)
G24856 NA non-coding downstream 808287 23282688 ~ 23285015 (+)
G24897 NA non-coding downstream 931558 23405959 ~ 23406837 (+)
G24898 NA non-coding downstream 932583 23406984 ~ 23425440 (+)
G24606 NA other upstream 180148 22281700 ~ 22282958 (+)
AMCG00007553 NA other upstream 196697 22263520 ~ 22266409 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other upstream 259155 22189245 ~ 22203951 (+)
AMCG00007547 clg23h15orf48,clg1h15orf48,c13h15orf48 other upstream 328392 22131573 ~ 22134714 (+)
AMCG00007514 arpp19,LOC103358163,LOC105892485,LOC107740885,LOC107569706 other upstream 1396323 21060159 ~ 21066783 (+)
AMCG00007585 star5,stard5,LOC104953929 other downstream 659410 23133811 ~ 23139521 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other downstream 715059 23189460 ~ 23193521 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other downstream 1183449 23657850 ~ 23670079 (+)
AMCG00007631 NA other downstream 1717820 24192221 ~ 24194481 (+)
AMCG00007640 NA other downstream 2002086 24476487 ~ 24499650 (+)

Expression


Co-expression Network