AMCG00007572 (LOC107703942,LOC103366351,LOC107665298,LOC107726337)


Basic Information

Item Value
gene id AMCG00007572
gene name LOC107703942,LOC103366351,LOC107665298,LOC107726337
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22561496 ~ 22576454 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007572
GTTTTGGGTGCTCGGCGGCTCTGCGTGTGAGATGAATCGGGACAGGATGCGAGGAGCGCTGTAGCCTCGTCGGTCACACCGCGGCGACACAGCAAGGCCCGCCGGGACCCAGACTGCTTCAACCGCGTCTTTTCGTCGTGTTATCCGGATCTTTTAGTGTTAGAATAGACGAAGAAAGGGTGCATTGCTAGGGCCTTTCgccgtttttatttatttatttccattttctttccacacacacaaaaaaaggctgCAGTCTTGATATCAACACATTCTCACTCCATCATttcaatacattgatttgcCTGTAAAGAAGAATATATATCTGCGTGTGCGTCTAGGTTATATTTACACAATGGCTCGTCCCCGGCCTCGGGAGTACAAAGCTGGAGATCTGGTTTTTGCCAAAATGAAAGGGTATCCACACTGGCCAGCGAGGATCGATGAACTCCCGGAAGGGGCTGTAAAGCCACCTGCAAATAAATACCCCATCTTCTTCTTTGGGACTCACGAAACTGCATTTCTGGGTCCAAAAGATCTGTTCCCATACAAGGAGTATAAAGATAAGTTTGGCAAGTCAAATAAGAGGAAAGGATTTAATGAAGGTCTGTGGGAAATTGAGAATAATCCCGGGGTCAAATTTACTGGATATCAGCACGTTGCGTTATTCAGCTTGTCCAACTTGTGCCGCATGCAGGCGATACAACAACAGAGCTCTTCGGAGACCGAGGGGGAAGGAGGAAACACTGCGGACGCCAGTAGCGAGGGCGAGGAGGGAGATTCAATAGAGGAGGATGGCAAAGGGAAGAGGAAGGGTGACAAAGCTGGATCCAAACGGAAGAAGACCGCATCCTCTAAGAAGTCGTCTAAGCTGTCCAGGAAGTCCTCGGGGGAAGAGGAAGTGGATAAAGACAGTAAGGATGATGAACACAAGAGCAGTTCGGAGGCTGGAGACCCTGACAACGATACGCGAAATGCTTCAGAAAGCAAGAAAGCCAGCGAAGGGaccTAATTACTCAGAGAAGAACGCTAAATGTTGAGGAAACCCTTTAAGGGAGTCATTAATTGTGGCTGTCAAGTGTTATTGGAGTTGTGAAATTATCATTGCTTTCTCATTGTCTACAACAATACCAGTTCTCCATTAGTAGATGCTGTCTCTTCTCATTACAGTATGTTGAAAGAATCAAATTGAgtcattttcacttttaatcAAAGCCTACTTCAGGTCCACCCATCCATATCATCATGATTTTGTAGACTGTTAGCATGTGGTCACCGCTAACAAGGagctttttttaagaaaaagaaaaaaacaataatatgtttaaaaaaaatccagaaacacacacacaatccgtAGTCTGTATTGCAATGTTCAGATCATTACTTGTAtagagctaaaataaaataaaaatgcattctaaAACCAACAAGATAGAAAATGGACTACCTTCAGGAACATTGTCTGTAGAAGTCTATTCACACCACTGTATCCTCTAATGTAATAAAAAGGCAACAGGATGGGGGAATTAAACTAAGTATAAATAAAACTTCACAATATTCAGACAACTGACTCTTTCAGTATTATTAGTTTAGAATATAGGACCATCTGTTCGacacaaacagattttctttCGTTTCTAAGGGAAAGTTAcgtctgtgttttctgtgcgtCCATTTTTTTCAGCTTTCAGTAGCATGTAGTCCAGACAAACTCTCAATTCACATTTTGAGGGTTTCCCTTTACCTGTGGTTTGATATTTGCTTTACCTCCATGTTGCAAATTTACAAGGTTCATTGTCTGCTGTTTTTGGAACATATAAGCTGACTGAAAACCAACTTTCCTAGCTGGAAACAAGCTCAAGATGGGCATTTGGACTGCAAGCAGAAATTCTGTATTTTCCCTGAACACATTTAAAGCATCTTTGTCCAGAAGTTAAGCATtccattaacattttataagtTACCTTTGCTTTGCTACTTTTTGTCAATAGAAAGaatatattctatttattttttgatgctAGTAAAACAGTTGTGGGGACAGAAACTCACTCTTGAGTTTTTGGTTacgttttaatatttgttatgcTTGTACTTGga
>TU31045
TCCATGTTTTGGGTGCTCGGCGGCTCTGCGTGTGAGATGAATCGGGACAGGATGCGAGGAGCGCTGTAGCCTCGTCGGTCACACCGCGGCGACACAGCAAGGCCCGCCGGGACCCAGACTGCTTCAACCGCGTCTTTTCGTCGTGTTATCCGGATCTTTTAGTGTTAGAATAGACGAAGAAAGGGTGCATTGCTAGGGCCTTTCgccgtttttatttatttatttccattttctttccacacacacaaaaaaaggctgCAGTCTTGATATCAACACATTCTCACTCCATCATttcaatacattgatttgcCTGTAAAGAAGAATATATATCTGCGTGTGCGTCTAGGTTATATTTACACAATGGCTCGTCCCCGGCCTCGGGAGTACAAAGCTGGAGATCTGGTTTTTGCCAAAATGAAAGGGTATCCACACTGGCCAGCGAGGATCGATGAACTCCCGGAAGGGGCTGTAAAGCCACCTGCAAATAAATACCCCATCTTCTTCTTTGGGACTCACGAAACGCGATACAACAACAGAGCTCTTCGGAGACCGAGGGGGAAGGAGGAAACACTGCGGACGCCAGTAGCGAGGGCGAGGAGGGAGATTCAATAGAGGAGGATGGCAAAGGGAAGAGGAAGGGTGACAAAGCTGGATCCAAACGGAAGAAGACCGCATCCTCTAAGAAGTCGTCTAAGCTGTCCAGGAAGTCCTCGGGGGAAGAGGAAGTGGATAAAGACAGTAAGGATGATGAACACAAGAGCAGTTCGGAGGCTGGAGACCCTGACAACGATACGCGAAATGCTTCAGAAAGCAAGAAAGCCAGCGAAGGGGTAAATTCTCGGCACATTTAAGTTTGGTTTTGAAGTATGTTGCTATTCTCCCTATCtggtatatacacacagacacacacatacacatatatatatgtgtgtatatatatatatatatatatatatatatatatatatgtatgtataacaATGTCTTGC

Function

NR:

description
PREDICTED: hepatoma-derived growth factor-related protein 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007572 True 2103 mRNA 0.41 6 22561496 22576449
TU31045 False 989 lncRNA 0.47 4 22564091 22576454

Neighbor

gene id symbol gene type direction distance location
AMCG00007574 btbd1,LOC106562729 coding downstream 9939 22545534 ~ 22551557 (-)
AMCG00007573 NA coding downstream 26318 22532656 ~ 22535178 (-)
AMCG00007571 NA coding downstream 74081 22475410 ~ 22487415 (-)
AMCG00007564 NA coding downstream 91065 22449285 ~ 22470431 (-)
AMCG00007566 NA coding downstream 224422 22332066 ~ 22337074 (-)
AMCG00007576 bnc1,LOC106591559 coding upstream 7275 22583729 ~ 22618108 (-)
AMCG00007579 NA coding upstream 109782 22686236 ~ 22687435 (-)
AMCG00007578 NA coding upstream 120975 22697429 ~ 22707695 (-)
AMCG00007584 NA coding upstream 276441 22852895 ~ 22856761 (-)
AMCG00007587 NA coding upstream 563068 23139522 ~ 23166677 (-)
G24721 NA non-coding downstream 40412 22518422 ~ 22521084 (-)
G24705 LOC105889120 non-coding downstream 112542 22446370 ~ 22448954 (-)
G24687 NA non-coding downstream 129183 22432067 ~ 22432313 (-)
G24640 NA non-coding downstream 299003 22260847 ~ 22262493 (-)
G24579 NA non-coding downstream 427515 22131389 ~ 22133981 (-)
G24797 NA non-coding upstream 377631 22954085 ~ 22954844 (-)
G24800 NA non-coding upstream 469659 23046113 ~ 23046373 (-)
G24816 NA non-coding upstream 557337 23133791 ~ 23134802 (-)
G24905 NA non-coding upstream 847159 23423613 ~ 23437517 (-)
G24942 LOC107578340,LOC107755647,LOC107662256,LOC107742335 non-coding upstream 1086438 23662892 ~ 23663540 (-)
AMCG00007565 gatm other downstream 203050 22340599 ~ 22358446 (-)
AMCG00007500 NA other downstream 2088577 20462504 ~ 20472919 (-)
G24217 NA other downstream 2229685 20331513 ~ 20331811 (-)
AMCG00007494 NA other downstream 2339492 20171329 ~ 20222004 (-)
AMCG00007487 NA other downstream 2638343 19915146 ~ 19923153 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other upstream 830474 23406928 ~ 23420303 (-)
G25026 NA other upstream 1395217 23971671 ~ 23972665 (-)
AMCG00007637 NA other upstream 1686236 24262690 ~ 24281564 (-)
G25422 NA other upstream 2687878 25264332 ~ 25264951 (-)
AMCG00007684 shf,LOC108430988 other upstream 3054338 25630792 ~ 25631592 (-)

Expression


Co-expression Network