AMCG00007581 (LOC106562675,LOC102798863)


Basic Information

Item Value
gene id AMCG00007581
gene name LOC106562675,LOC102798863
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22906458 ~ 22920751 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007581
ATGGGGGAGTATATATTGAAGTCTGCCACAATATCGACCTCCTCAGCATGTCCTCCATTCACTCCTCTGAACTTCGAAGCCAACCCAATTGTGCGTGTTGCTGTCGAGCCCAAGCATCCAAGTGAGATGCACAAGCTGGTACGAGGAATGAAGCTGTTAAACCAGGCTGACCCCTGTGCCGAGGTGCTCATACAGGAGACGGGGGAGCATGTGTTGGTGACTGCAGGAGAAGTTCATCTCCAGCGTTGCCTTGACGATCTGAGACAAAGaTTTGCCAAGATAGAAATCAGTGCATCAGAACCCATTATTCCCTTCAGAGAGACTATCATCCAACCCCCGAAAGTCGACATGGTGAATGAAGACATGGGGAAACAGCAGAAGGTCGCTGTGATACATCAAGTAAAGGAAGAGCAATCTAAGTCTTTGGAAGGTTTCCACGTTGATGCTAGTGGGTTGGTTACACTTACTACATCCAACAAACTGGCCACCATTGGAGTCAGAGCAATGCCACTACCAGAAGAGGTGACAAGGCTCCTAGAGGAGAATGGTGATCTCATCCGCACAATGGAGCAGTTCAACCTATCAGTAAAAGAGGGCAAGAAGACTCTGGAAATCAACCAGAAAACCTTGGAGTCCATCCAGCAGTTAAAACAGAAGCTGGAGTCTCTTTTACAAGGGCGGAAATGGAGGAATGCTGTGTACTGCATTTGGTCATTTGGGCCTCGGCGATATGGCCCTAATATCTTACTCAACAGACTAGATGGCTATCAGCGACCATCAGTGTGGCAGTGTCTGGATAAGGCCAAGAATGACATTGGGCTGTACAGGGATTTTGACAACAGCATCGTTAGTGGGTTTCAGCTGGCCACGCTCTCTGGGCCCATGTGTGAAGAGCCTCTTATGGGAGTGTGCTTCTCGGTGGAGAAGTGGGACATGAAGGTGCCCCATACCCTGACACACGATTCCCATCAGGACTCGGTGGGGGAGGATGCCTCGGGGGATATCGCTCAACCTGCACAGCCTGCTGCCTGTGAGGAACCTCAGGAAGCACATGTGCAACCAACATCTAATTCCAACAAACGTCGAAATGAACCGGCTGTCACTGACTGCTACGGACCATTCTCGGGTCAGATCATCGCAGCCATGAAGGAGGCCTGTCGACACGCCTTTCAAGCTAAACCTCAGAGACTCATGGCCGCGATGTACACCTGTGAAATCATGGCCACCGCAGAGGTACTAGGTCGTGTCTATGGTGTCCTGTCCAAAAGAGAAGGCCGAGTGCTGCTGGAGGAGATGAAGGAAGGCACAGACATGTTCATCATTAAGGCAGTCCTCCCAGTGGCGGAGAGCTTCGGGTTTGCAGATGACATCCGGAAACGGACAAGTGGCCTGGCCAGTCCACAGCTGATTTTCAGTCACTGggaggtgaTATCCAGTGATCCTTTCTGGGTTCCTACTACCGAAGAGGAGTACTTACACTTTGGAGAAAAGGCAGACTCTGAAAACCAGGCACACAAGTATATGAATGCTGTGCGCAAACGCAAAGGGCTCTACGTGGAGGAGAAGATCGTGGAGCACGCCGAGAAGCAGAGAACTCTTGGCAGAAAC

Function

NR:

description
PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1-like, partial

GO: NA

KEGG:

id description
K14536 RIA1; ribosome assembly protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007581 True 1608 mRNA 0.51 5 22906458 22920751

Neighbor

gene id symbol gene type direction distance location
AMCG00007583 efl1,LOC102798863 coding upstream 27206 22857515 ~ 22879252 (+)
AMCG00007582 NA coding upstream 53663 22790893 ~ 22852795 (+)
AMCG00007577 NA coding upstream 209037 22691353 ~ 22697421 (+)
AMCG00007575 NA coding upstream 220750 22677046 ~ 22685708 (+)
AMCG00007568 tm6sf1 coding upstream 345691 22552690 ~ 22560767 (+)
AMCG00007580 mex3b,LOC107662268,LOC107709501,LOC107584525,LOC107685193,LOC107736985,LOC107553747 coding downstream 29941 22950692 ~ 22953518 (+)
AMCG00007586 tmc3,LOC107736984,LOC107553743,LOC107373975 coding downstream 196100 23116851 ~ 23132274 (+)
AMCG00007589 mesdc2,LOC107591313 coding downstream 278401 23199152 ~ 23202769 (+)
AMCG00007598 NA coding downstream 466910 23387661 ~ 23387840 (+)
AMCG00007593 NA coding downstream 501265 23422016 ~ 23431721 (+)
G24742 NA non-coding upstream 323304 22581469 ~ 22583154 (+)
G24701 NA non-coding upstream 443906 22462124 ~ 22462552 (+)
G24700 NA non-coding upstream 444995 22460469 ~ 22461463 (+)
G24699 NA non-coding upstream 446145 22459884 ~ 22460313 (+)
G24698 NA non-coding upstream 446941 22459020 ~ 22459517 (+)
G24793 NA non-coding downstream 32858 22953609 ~ 22954842 (+)
G24856 NA non-coding downstream 361937 23282688 ~ 23285015 (+)
G24897 NA non-coding downstream 485208 23405959 ~ 23406837 (+)
G24898 NA non-coding downstream 486233 23406984 ~ 23425440 (+)
G24992 pcsk6 non-coding downstream 924753 23845504 ~ 23851902 (+)
G24606 NA other upstream 623500 22281700 ~ 22282958 (+)
AMCG00007553 NA other upstream 640049 22263520 ~ 22266409 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other upstream 702507 22189245 ~ 22203951 (+)
AMCG00007547 clg23h15orf48,clg1h15orf48,c13h15orf48 other upstream 771744 22131573 ~ 22134714 (+)
AMCG00007514 arpp19,LOC103358163,LOC105892485,LOC107740885,LOC107569706 other upstream 1839675 21060159 ~ 21066783 (+)
AMCG00007585 star5,stard5,LOC104953929 other downstream 213060 23133811 ~ 23139521 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other downstream 268709 23189460 ~ 23193521 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other downstream 737099 23657850 ~ 23670079 (+)
AMCG00007631 NA other downstream 1271470 24192221 ~ 24194481 (+)
AMCG00007640 NA other downstream 1555736 24476487 ~ 24499650 (+)

Expression


Co-expression Network