AMCG00007583 (efl1,LOC102798863)


Basic Information

Item Value
gene id AMCG00007583
gene name efl1,LOC102798863
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 22857515 ~ 22879252 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007583
gcaATCCACAATGCGGCGCACGAGTTTAGACAAGATTATTGCGCAtcagaaaaacacagcaaacatcaggaatatttgtattttagctCATGTTGACCATGGTAAAACAACTTTAGCAGACTGCCTGGTTGCGAGCAATGGCATCATATCCAATCGGTTAGCAGGGAAGCTGAGGTACTTGGACAGCAGAGAAGATGAACAAATCAGGGGAATTACCATGAAATCCAGTGGAATATCACTACATTTTACTAGTGATGAGAACGACTACCTAGTCAATCTGATCGATTCTCCGGGTCACGTGGACTTCTCTTCAGAGGTATCGACAGCAGTACGGCTCTGTGATGGGGCCATCATAATCGTAGATGCTGTTGAAGGAGTCTGTCCTCAGACACAAGCAGTATTACGTCAGGCCTGGCTAGAAAACATCCGTCCAGTATTGGTGATCAATAAAATTGACAGACTTATAGTTGAACTCAAACTAACTGCACAAGAATCCTATACTCACCTTCAGAAAATCCTGGAACAGGTAAATGCTGTCACTGGGTCTCTTTTTACCTCTAAAGTCCTTGAAGAAAGAGCTGAGAAGAGCACAGACATGCAGAGTTGTGAAAACCAGAGTGGAGAGCAGGTTTATGACTGGAGTGCGGGACTGGAGGAAACAGATGACTCTCACCTGTACTTCTCACCTGACCAAGGCAATGTGGTGTTTGCCAGTGCAATAGATGGATGGGGCTTCAgAATACAGCAATTTGCACAGATATATAGTAAAAAAATGGGGATTAAGGCTGAGGTGCTGCTCAAAACCCTGTGGGGAGATTTTTATCTCAATGCCAAAGCAAAGAAGATAATGAAGGGTGCTCAGacaAAAGGGAAAAAGACCCTCTTTGTTCAGTTGGTACTTGAAAATATATGGAGTTTATATGAAGCTGTTCTTACCAGAagagacaaagaaaaaactgaaaagatgGTGACCTCCCTGGGTCTGAATGTTTCTGCGAGAGACTTCCGTCACACTGATCCTAAGGTTCTCCTCAGTGCCATATGTAAAAGGGTAGAAAAACTCATGTGTGTTGGAGCAAGAAGGTTTGATTCTCTACCTGAAAAAACACAGGAGCTGAAGAGAGcTTTCCTGGAGTGTAAAAACGACGAGACAGCTCCAGTCATCGTGTTTGTATCCAAGATGTTTGCTGTTGATTCAAAGTCATTGCCACAGAACAGGCTGAGGCCTTTATCTCAAGACGAATTAGCCCAGCGAAGGGAATTAGCCAGGCAGAGGCATGCAGAGAGGCTGTCGGCCATTCAAGGACCAGATGCCCCTGAGCATGCTGGGAATGGATCTTTGCTCAAAACTGAAGTCCCAGCTGCGGAGAACTCCTTGAGGTTGCATAATGATACCCaagGTGGAGAACTGCTTTGTAGTCAGATGGAGGCTATTACTCTGAAAGCTAACAAGACAGAGGAGGACGAGAAAGAACATTTCATTGCCTTTGCTAGGGTGTACAGTGGCCTAGCACGGAAAGGGCAGAAGGTGTTTGTCTTGGGTCCAAAGTACGATCCTGCTGAAACCTTAAACAAGCTGCCTGAGGGCTGTTCTGCTACCGATGATCTTTCATCAATACCTCACATGGCTTGCTGTACACTTGAGAATCTCTATCTGTTGATGGGGAGAGAGCTGGAGGAGCTAGAAGAGGTGCCCTCAGGCAATGTG

Function

symbol description
efl1 Predicted to enable GTPase activity and ribosome binding activity. Predicted to be involved in mature ribosome assembly. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in Shwachman-Diamond syndrome. Orthologous to human EFL1 (elongation factor like GTPase 1).

NR:

description
PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1

GO: NA

KEGG:

id description
K14536 RIA1; ribosome assembly protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007583 True 1708 mRNA 0.45 15 22857515 22879252

Neighbor

gene id symbol gene type direction distance location
AMCG00007582 NA coding upstream 4720 22790893 ~ 22852795 (+)
AMCG00007577 NA coding upstream 160094 22691353 ~ 22697421 (+)
AMCG00007575 NA coding upstream 171807 22677046 ~ 22685708 (+)
AMCG00007568 tm6sf1 coding upstream 296748 22552690 ~ 22560767 (+)
AMCG00007570 NA coding upstream 308106 22536885 ~ 22549409 (+)
AMCG00007581 LOC106562675,LOC102798863 coding downstream 27206 22906458 ~ 22920751 (+)
AMCG00007580 mex3b,LOC107662268,LOC107709501,LOC107584525,LOC107685193,LOC107736985,LOC107553747 coding downstream 71440 22950692 ~ 22953518 (+)
AMCG00007586 tmc3,LOC107736984,LOC107553743,LOC107373975 coding downstream 237599 23116851 ~ 23132274 (+)
AMCG00007589 mesdc2,LOC107591313 coding downstream 319900 23199152 ~ 23202769 (+)
AMCG00007598 NA coding downstream 508409 23387661 ~ 23387840 (+)
G24742 NA non-coding upstream 274361 22581469 ~ 22583154 (+)
G24701 NA non-coding upstream 394963 22462124 ~ 22462552 (+)
G24700 NA non-coding upstream 396052 22460469 ~ 22461463 (+)
G24699 NA non-coding upstream 397202 22459884 ~ 22460313 (+)
G24698 NA non-coding upstream 397998 22459020 ~ 22459517 (+)
G24793 NA non-coding downstream 74357 22953609 ~ 22954842 (+)
G24856 NA non-coding downstream 403436 23282688 ~ 23285015 (+)
G24897 NA non-coding downstream 526707 23405959 ~ 23406837 (+)
G24898 NA non-coding downstream 527732 23406984 ~ 23425440 (+)
G24992 pcsk6 non-coding downstream 966252 23845504 ~ 23851902 (+)
G24606 NA other upstream 574557 22281700 ~ 22282958 (+)
AMCG00007553 NA other upstream 591106 22263520 ~ 22266409 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other upstream 653564 22189245 ~ 22203951 (+)
AMCG00007547 clg23h15orf48,clg1h15orf48,c13h15orf48 other upstream 722801 22131573 ~ 22134714 (+)
AMCG00007514 arpp19,LOC103358163,LOC105892485,LOC107740885,LOC107569706 other upstream 1790732 21060159 ~ 21066783 (+)
AMCG00007585 star5,stard5,LOC104953929 other downstream 254559 23133811 ~ 23139521 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other downstream 310208 23189460 ~ 23193521 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other downstream 778598 23657850 ~ 23670079 (+)
AMCG00007631 NA other downstream 1312969 24192221 ~ 24194481 (+)
AMCG00007640 NA other downstream 1597235 24476487 ~ 24499650 (+)

Expression


Co-expression Network