AMCG00007585 (star5,stard5,LOC104953929)


Basic Information

Item Value
gene id AMCG00007585
gene name star5,stard5,LOC104953929
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23133811 ~ 23139521 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007585
GGCAAGATCAAGGAAGCTCTTGGTTTGAAAGAAAATCTACACATATAAAAGGAAAAGGGCTGTGTTCGCATTACCGAAAGAGAaactaatagtaataaaaacatCTAAGCCTAATATCTGATCATTTACATAATCGATATACCATTTATTGCAGTTAATTCGTTACCACTACCGGAAAATATGAATAAGTAAGTTGTTtatgcaattatatttatataatataattctatttttgtatcgttttttatgattaaaatctaattatacGTACCTAATGTTTGTGCTCAGCCCTCAGTATATATTAGTATGTATGGAGGCTGAAGCATTGCGGTGGCGTTTGACCTCTGGGATTAGATTTGGTGCCTGCTGTACCATTTTAGACCAATTTAAGGGAAACATGATAAGTAagaattagtatttcacagataTCATCGAGAATTAGTCTGCTTTCTCTGGACCCATCTTTTGCAGTTAGCTGAAGCCAACAACAGGTAGTGCACTGCATTGTAATTACGCATTATATACGATGGATTATAAGCAAATAGCAAATATAGTTGCTGACAATCTGCTCAGCTACAGCAAAGATGAGAGTGGATGGAAAGTCTGCAAGAAATCGAATGAAGTGACAGTTCATTGGAGGCCATCAACTGAATTTCCAGGAAATTTATACAAAGGAGAAGGCATCATAAAAGGAAACCCAGAAAAAGTGTGGCAGTGTTTGAAACCGGTCCCGGAAGGGCTTCGAGTCAAGTGGGATAACAATGTAAAGAAGTTTGAGCTGATAGAAATGATCGATTATgatgtgtctgtctgcagaaCTGTCACTCCCTCGGCAGCTATGGGTATTATTTCTCCTCGAGACTTTGTAGATGTTGTTTTAGTTAAGCAATATGAAGATGGCACCATTACATCAAATGCTACCCATGTAGGACACCCAGGGTGCCCTCCTCAGCCGGGCTTTGTCAGAGGGTTTAACCATCACTGTGGTTGCTTTTGTGTACCCATCCCTGGGGAACCAAACAAGACCCAGCTCTTAAGTTTTTTTCAGACTGACCTTGGAGGCTTCCTCCCTCGATCTGTGGTGGATTCCTTCTTCCCCTCTAGTATGGCAGAATTTTACAGCAACCTCGCCAAAGCAGTTAAAACGCTAAAAGAAGACTGAATATTCTCTCGTCAGAATTGTGAAAATATCACACCGAGTgaccttttgtttatttcagtttcttgcAGAAAAGActgcataattatttatttttttaccataaACAGACCAGTGTCATAGATGCTACCAAATTATCTGCCTATtgtcacagaaaaataatctttttaGCAGCACAGTATTGCATAGAGTACGGAATATCACACAATAGTAATTATACATACTAATGACATTCATGTTTATGGACCATTCAGAATGTCCATAAAGGGCCCTTTTCATCTGTATCTGATGATTATCTTAATTAAGACGTGGCCGCCTTTAAACTTGCATTcctatgtaaattatattattacttgTATAACTCTGAGATGCGTGTGCATTTGAAAGGTGCATAAACCTAACGGGGAATGTTCATGTGTGCGAATGAGTGAAAGGACACATTCCATCTGACCATACGGGTGATGTTATGAAACTGGCAGGGAGAATATCTGGAACATATTGTTAACAAAGTTCCCCATTTGAAACTaccaacattttaaactttataaGCAGTTCATCATCAGAGGCCTAAGCCTTGAACTATAGAGTATGAATTATAGCTTCCTCTGACAGTAAACCATACATTTTGTCTGTCAAGTGTTACTTGTCCATTTCACACTGTGAAAACCACCTGTTTGGGCATAGCTGCTGCCCAGGTAACACTACTCAGTAAcacttgtgatttttttttgttgttgttggtattgattaatgtcattttttaattaatttagttttaaaatgtaaactatatgtgttctatagctctttaatttgttttactgctgatttaatgtcatattgttataattatatttagatGGGCCTGATTTCTAGAGTTTACtaaagaaaactgaatatttccatctgtgtttaaaatgttgcacCCTGCATAACTTTAATTGGTAATGTGAAGAgtaattttaatacatattttcaaaaagtaGGAGGTCAGTGATGAAAACTTCTACCACAGCATTATTGGGTTTGtgctacaaaaaaaatcaattagtGTTTTTAGATTTATATGTTTTAGTCTTTGTATTAACATATCACAACTAGTCTTGTATGCTGTacaagtttattatattttgaattatttgataatttattttattaaagtttgtAACAGATACTCTACTATCGTATGAGGTATGGACTCCTTGATAATTAAACCAAATGCTGCTATGAAAAACGATCACGTCAATGTAAGTTGCACTGTAGTAGTTAATAAAGGAGATATATGCGTATTGTGATTGACTGTGTgtgcaaatgaaatgtattaaatgtatttattttgtattttaatagcatgcgaattaaaaaaatgaacctCATTGTATACCTGAATATTATGTGCTTATTTGATTTACAGAACAACATTTCCAGTATTCTGCCAGCTGAATTGGTACAGTGTGTTATT
>TU31123
TCAAGGAAGCTCTTGGTTTGAAAGAAAATCTACACATATAAAAGGAAAAGGGCTGTGTTCGCATTACCGAAAGAGAaactaatagtaataaaaacatCTAAGCCTAATATCTGATCATTTACATAATCGATATACCATTTATTGCAGTTAATTCGTTACCACTACCGGAAAATATGAATAAGTAAGTTGTTtatgcaattatatttatataatataattctatttttgtatcgttttttatgattaaaatctaattatacGTACCTAATGTTTGTGCTCAGCCCTCAGTATATATTAGTATGTATGGAGGCTGAAGCATTGCGGTGGCGTTTGACCTCTGGGATTAGATTTGGTGCCTGCTGTACCATTTTAGACCAATTTAAGGGAAACATGATAAGTAagaattagtatttcacagataTCATCGAGAATTAGTCTGCTTTCTCTGGACCCATCTTTTGCAGTTAGCTGAAGCCAACAACAGGTAGTGCACTGCATTGTAATTACGCATTATATACGATGGATTATAAGCAAATAGCAAATATAGTTGCTGACAATCTGCTCAGCTACAGCAAAGATGAGAGTGGATGGAAAGTCTGCAAGAAATCGAATGAAGTGACAGTTCATTGGAGGCCATCAACTGAATTTCCAGGAAATTTATACAAAGGAGAAGGCATCATAAAAGGAAACCCAGAAAAAGTGTGGCAGTGTTTGAAACCGGTCCCGGAAGGGCTTCGAGTCAAGTGGGATAACAATGTAAAGAAGTTTGAGCTGATAGAAATGATCGATTATCTACCCATGTAGGACACCCAGGGTGCCCTCCTCAGCCGGGCTTTGTCAGAGGGTTTAACCATCACTGTGGTTGCTTTTGTGTACCCATCCCTGGGGAACCAAACAAGACCCAGCTCTTAAGTTTTTTTCAGACTGACCTTGGAGGCTTCCTCCCTCGATCTGTGGTGGATTCCTTCTTCCCCTCTAGTATGGCAGAATTTTACAGCAACCTCGCCAAAGCAGTTAAAACGCTAAAAGAAGACTGAATATTCTCTCGTCAGAATTGTGAAAATATCACACCGAGTgaccttttgtttatttcagtttcttgcAGAAAAGActgcataattatttatttttttaccataaACAGACCAGTGTCATAGATGCTACCAAATTATCTGCCTATtgtcacagaaaaataatctttttaGCAGCACAGTATTGCATAGAGTACGGAATATCACACAATAGTAATTATACATACTAATGACATTCATGTTTATGGACCATTCAGAATGTCCATAAAGGGCCCTTTTCATCTGTATCTGATGATTATCTTAATTAAGACGTGGCCGCCTTTAAACTTGCATTcctatgtaaattatattattacttgTATAACTCTGAGATGCGTGTGCATTTGAAAGGTGCATAAACCTAACGGGGAATGTTCATGTGTGCGAATGAGTGAAAGGACACATTCCATCTGACCATACGGGTGATGTTATGAAACTGGCAGGGAGAATATCTGGAACATATTGTTAACAAAGTTCCCCATTTGAAACTaccaacattttaaactttataaGCAGTTCATCATCAGAGGCCTAAGCCTTGAACTATAGAGTATGAATTATAGCTTCCTCTGACAGTAAACCATACATTTTGTCTGTCAAGTGTTACTTGTCCATTTCACACTGTGAAAACCACCTGTTTGGGCATAGCTGCTGCCCAGGTAACACTACTCAGTAAcacttgtgatttttttttgttgttgttggtattgattaatgtcattttttaattaatttagttttaaaatgtaaactatatgtgttctatagctctttaatttgttttactgctgatttaatgtcatattgttataattatatttagatGGGCCTGATTTCTAGAGTTTACtaaagaaaactgaatatttccatctgtgtttaaaatgttgcacCCTGCATAACTTTAATTGGTAATGTGAAGAgtaattttaatacatattttcaaaaagtaGGAGGTCAGTGATGAAAACTTCTACCACAGCATTATTGGGTTTGtgctacaaaaaaaatcaattagtGTTTTTAGATTTATATGTTTTAGTCTTTGTATTAACATATCACAACTAGTCTTGTATGCTGTacaagtttattatattttgaattatttgataatttattttattaaagtttgtAACAGATACTCTACTATCGTATGAGGTATGGACTCCTTGATAATTAAACCAAATGCTGCTATGAAAAACGATCACGTCAATGTAAGTTGCACTGTAGTAGTTAATAAAGGAGATATATGCGTATTGTGATTGACTGTGTgtgcaaatgaaatgtattaaatgtatttattttgtattttaatagcatgcgaattaaaaaaatgaacctCATT

Function

symbol description
stard5 Predicted to enable bile acid binding activity and lipid binding activity. Predicted to act upstream of or within lipid transport. Orthologous to human STARD5 (StAR related lipid transfer domain containing 5).

NR:

description
StAR-related lipid transfer protein 5

GO:

id name namespace
GO:0006694 steroid biosynthetic process biological_process
GO:0030301 cholesterol transport biological_process
GO:0015485 cholesterol binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007585 True 2621 mRNA 0.35 6 23133811 23139521
TU31123 False 2412 lncRNA 0.35 5 23133818 23139437

Neighbor

gene id symbol gene type direction distance location
AMCG00007586 tmc3,LOC107736984,LOC107553743,LOC107373975 coding upstream 1537 23116851 ~ 23132274 (+)
AMCG00007580 mex3b,LOC107662268,LOC107709501,LOC107584525,LOC107685193,LOC107736985,LOC107553747 coding upstream 180293 22950692 ~ 22953518 (+)
AMCG00007581 LOC106562675,LOC102798863 coding upstream 213060 22906458 ~ 22920751 (+)
AMCG00007583 efl1,LOC102798863 coding upstream 254559 22857515 ~ 22879252 (+)
AMCG00007582 NA coding upstream 281016 22790893 ~ 22852795 (+)
AMCG00007589 mesdc2,LOC107591313 coding downstream 59631 23199152 ~ 23202769 (+)
AMCG00007598 NA coding downstream 248140 23387661 ~ 23387840 (+)
AMCG00007593 NA coding downstream 282495 23422016 ~ 23431721 (+)
AMCG00007605 aldh1a3,LOC106562593 coding downstream 553721 23693242 ~ 23708772 (+)
AMCG00007606 lrrk1,LOC106593346,LOC106591281,LOC106562602,LOC106593412 coding downstream 573662 23713183 ~ 23759994 (+)
G24793 NA non-coding upstream 178969 22953609 ~ 22954842 (+)
G24742 NA non-coding upstream 550657 22581469 ~ 22583154 (+)
G24701 NA non-coding upstream 671259 22462124 ~ 22462552 (+)
G24700 NA non-coding upstream 672348 22460469 ~ 22461463 (+)
G24699 NA non-coding upstream 673498 22459884 ~ 22460313 (+)
G24856 NA non-coding downstream 143167 23282688 ~ 23285015 (+)
G24897 NA non-coding downstream 266438 23405959 ~ 23406837 (+)
G24898 NA non-coding downstream 267463 23406984 ~ 23425440 (+)
G24992 pcsk6 non-coding downstream 705983 23845504 ~ 23851902 (+)
G24997 NA non-coding downstream 721161 23860682 ~ 23863793 (+)
G24606 NA other upstream 850853 22281700 ~ 22282958 (+)
AMCG00007553 NA other upstream 867402 22263520 ~ 22266409 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other upstream 929860 22189245 ~ 22203951 (+)
AMCG00007547 clg23h15orf48,clg1h15orf48,c13h15orf48 other upstream 999097 22131573 ~ 22134714 (+)
AMCG00007514 arpp19,LOC103358163,LOC105892485,LOC107740885,LOC107569706 other upstream 2067028 21060159 ~ 21066783 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other downstream 49939 23189460 ~ 23193521 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other downstream 518329 23657850 ~ 23670079 (+)
AMCG00007631 NA other downstream 1052700 24192221 ~ 24194481 (+)
AMCG00007640 NA other downstream 1336966 24476487 ~ 24499650 (+)
G25822 NA other downstream 4944301 28083822 ~ 28094741 (+)

Expression


Co-expression Network