AMCG00007586 (tmc3,LOC107736984,LOC107553743,LOC107373975)


Basic Information

Item Value
gene id AMCG00007586
gene name tmc3,LOC107736984,LOC107553743,LOC107373975
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23116851 ~ 23132274 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007586
CAACTCAGATGACGATGATAAAACTGATGAACGAGTGGAAAGCAATGACCCAGAGGAAATGTTCCAGAACATTCAAATTCAGAAGGAGATCATCGCAAATATTCGCACCAGACCTGCGCCGATGAGACACAAACTGAAAGCCCTCAAACAAGCCAGAGAGATTGTCTTGAAGTATGAAGGCAGACTGACAAGGACAAGAGGTTATCAAGCTGCTGGAGCTGATttgctGAAGAAACTATCTCGTTTGGCATATAATATAGTAGTTCTTTTCATTCCATGGGAAATGAGGATAAAGAAGATTGAGAGTCATTTCGGATCTGGTGTGgcttcttatttcatctttCTGAGGTGGCTGTTTGGTATCAATATTGTACTCACAATCATGACCGGAGCGTTCGTGATTCTGCCCGAAGGCTACCTCCAGTACTCTGTGCTGTTTTACGGCTACTATGGCAGAGTCAGGAAGATCGGAAGTGCAGGGTATCGTCTGCCCTTGGCGTACTTTTTGGTTGGGATGGCTGTTTTTGCCTACAGTTTCATCATTCTTTTAAGAAAAATGGCAAAAAACTCCAGGCTTAGTTTAGCTAGTGCTTCAGATGAGAACTACACTTTCTGCTGGCGTGTTTTCTGTGCCTGGGACTACCTGATAGGCAATCCCGAGGCTGCAGAGAGCAAAGGAGCGGCTATAGTTAACAACATCAGGGAAGCAATTCtagaagaacaagaaaagaagaaagacaaaagcTTAGCAGTAATGATAAGTCTGCGAATCCTTGCAAACATCCTTGTTCTTCTCTCGCTTGCTGGAAGCATTTATATCATCTACTTTGTTGTTGACCGCTCTCAAAAGCTTGAACAGGAGAAGCCAGAATTAACCCTGTGGGAAAAGAATGAGGTTAGTGTGGTTGTGTCTCTCATCACCATGATTGCACCCTCTGCTTTTGAACTCGTTGCCCAGCTGGAGATGTATCACCCAAGGACAATGCTACGGTTCCAGCTTGCCAGGGTTCTTGTCCTGTACCTGGGAAACCTCTACAGTTTAATCATTGCTCTGTTGGACAAGGTGAACAGCATGAGTTCAGATGAGCTTACCATCAATTCCAGCATGTCAGATTCCACTGCCTTCTTGGCCACCATTGCTCTTCCAGAAGAGGAGAACCTGTCCACTATTGTACCTGATATCTCAGAGAGGAGGAATAGCACCCTGAGTGTAGCAATCAAAGAGAACAAGACCAAGTCAATCGTATCTGTAGTGTTTAATGGGACTTATTCATATGAATACAACATGAAGTCCCAAGACCAGTGCTGGGAGACCTATGTTGGGCAGgAAATGTTAAAACTCTCCATTATAGATATGATTTTTACTGTGGCGAGTatcttattgattgatttcttccGTGGCCTTTTTGTTCGATACCTGAGTGATTGCTGGTGCTGGGATCTGGAGAGCAAGTTTCCTGAATACGGCGAATTTAAAATAGCTGAAAACGTCCTACATTTGATTTACAACCAAGGGATGATATGGATGGGTGCCTTCTTTTCCCCGTGCCTGCCAGCTTTCAACGTGCTCAAACTGATCGGCCTGATGTACCTGCGGAGCTGGGCCGTGCTGACGTGCAATGTTCCCCATCAGCAGGTCTTCAGAGCCTCCAGATCCAATAATTTCTACCTTACAATGCTTTTGTTTATGCTGTTTCTTTGTATGCTTCCAACAATTTTTGCGATTGCGAGATACAGACCGTCACAAACATGTGGACCTTTCAGcggCCAAGAAAAGATTTACGACATTATTTCTGAGACTGTTGCTACCGATTTCCCCTTGTGGTTCAGCAAAGTAATGGGTTACATCACAAGCCCTGTGGTTGTGCTTCCAGCTCTGCTACTGCTTTTCATGTTGATCTATTATCTGCAGTCTATTGCAAGATCATTAAAATTCACCAACAATCAGCTGAGAATGCAGCTTCAGACAGAGAGAACAGAAGATAAGAAGAAGGTTTTTCAGATGGCAGCAGCAAGAATTCAGGGCCAAGAAGGCAGTGATAAAAAGACAGAGCAGGAGAGCGATATAACAAGTCAGGAGTCTTCCATACGCTCCTCTTCTCCCAGACGAAATGGAAGTGTGACAAACTTTGAGTCTCCAGTGAGCAGAGGCAATAGCATCCGCACCATCACCCAGTCTGCATCTCGAACTGAAGTCAATCGGGCAGCAACTGCCTCTCAAAGCCCATCCATTCCTGtcttacaaaaacacagaatggAGCACATTCCAAACAGaaatccaGGATTTCAACAAGGTGATGCAAGTGGATCCTGCAGATTGAAGTCCTATCATCATGTGGCCTACAATCCTTCGGCCAGGTACAATGAGAATGTGCATTCAGATCCTTTATTCAGGAAGAACAACCGGCCTGGTCATCCTGACGCAATGGGAGGCGGAGGAGGTGCCCAGAGTTTCATTAGCCGCCGATCCCACACCACCCGCTATGTGATTGTCAACGAGCATGAGGCCCGGAAAAAGATGATGCGGTCCTCCAGTCGACTACCGAGACACTACAGGGTGGATGAACCAGGGGATATAGTGGAGCTGTATCCCAGGCACATCAAAAGGTACAGTGTCCGGACTCCCCAGAGGTCACATCAGTCTCACCtcagtgaagaggaagaggaagaggaagggaaGGGAGCAAGGAAGGGCTCCTTCAGCCAGACACACCGGCCCAGATCGCTGTCAGATCTACACCAGCCGGCCCGATTCTACATCGGAGACAAAGTGGACAGCCAGCTTTCCATCGCCAAAGACATGGCAAAGGGCCGCTATGGAGTGTATGAAGATGACTGCAGAGTGGAGTGGGAGGATATGACGTCTCGCTCCCGGCCCCGGACACACATCAAAAGCATTGAGCCCCCTGAGCGACACTCCGAGCCGCAGGTCAAGCCCAAACTGAAGCACAAGCTGGAACCATCCTTGACAGAATCAGACTCAGCATCCATTGCATCTAGCAGTGATCAGCAAAACAGCAGCACCGACCAGTACATTCAGGTCATCCATAACAAGGAGAAATACCTCAAGTCTAGTGGCAAGTTGACCAAAAAGAAGTCTAAGGCCAGTATCGATTTGAATGTGTCTGGATCCAATGAACTGGTTTGCTCC

Function

symbol description
tmc3 Predicted to enable mechanosensitive ion channel activity. Predicted to be involved in ion transmembrane transport. Predicted to be integral component of plasma membrane.

NR:

description
PREDICTED: transmembrane channel-like protein 3

GO: NA

KEGG:

id description
K21988 TMC; transmembrane channel-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007586 True 3151 mRNA 0.47 20 23116851 23132274

Neighbor

gene id symbol gene type direction distance location
AMCG00007580 mex3b,LOC107662268,LOC107709501,LOC107584525,LOC107685193,LOC107736985,LOC107553747 coding upstream 163333 22950692 ~ 22953518 (+)
AMCG00007581 LOC106562675,LOC102798863 coding upstream 196100 22906458 ~ 22920751 (+)
AMCG00007583 efl1,LOC102798863 coding upstream 237599 22857515 ~ 22879252 (+)
AMCG00007582 NA coding upstream 264056 22790893 ~ 22852795 (+)
AMCG00007577 NA coding upstream 419430 22691353 ~ 22697421 (+)
AMCG00007589 mesdc2,LOC107591313 coding downstream 66878 23199152 ~ 23202769 (+)
AMCG00007598 NA coding downstream 255387 23387661 ~ 23387840 (+)
AMCG00007593 NA coding downstream 289742 23422016 ~ 23431721 (+)
AMCG00007605 aldh1a3,LOC106562593 coding downstream 560968 23693242 ~ 23708772 (+)
AMCG00007606 lrrk1,LOC106593346,LOC106591281,LOC106562602,LOC106593412 coding downstream 580909 23713183 ~ 23759994 (+)
G24793 NA non-coding upstream 162009 22953609 ~ 22954842 (+)
G24742 NA non-coding upstream 533697 22581469 ~ 22583154 (+)
G24701 NA non-coding upstream 654299 22462124 ~ 22462552 (+)
G24700 NA non-coding upstream 655388 22460469 ~ 22461463 (+)
G24699 NA non-coding upstream 656538 22459884 ~ 22460313 (+)
G24856 NA non-coding downstream 150414 23282688 ~ 23285015 (+)
G24897 NA non-coding downstream 273685 23405959 ~ 23406837 (+)
G24898 NA non-coding downstream 274710 23406984 ~ 23425440 (+)
G24992 pcsk6 non-coding downstream 713230 23845504 ~ 23851902 (+)
G24997 NA non-coding downstream 728408 23860682 ~ 23863793 (+)
G24606 NA other upstream 833893 22281700 ~ 22282958 (+)
AMCG00007553 NA other upstream 850442 22263520 ~ 22266409 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other upstream 912900 22189245 ~ 22203951 (+)
AMCG00007547 clg23h15orf48,clg1h15orf48,c13h15orf48 other upstream 982137 22131573 ~ 22134714 (+)
AMCG00007514 arpp19,LOC103358163,LOC105892485,LOC107740885,LOC107569706 other upstream 2050068 21060159 ~ 21066783 (+)
AMCG00007585 star5,stard5,LOC104953929 other downstream 1537 23133811 ~ 23139521 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other downstream 57186 23189460 ~ 23193521 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other downstream 525576 23657850 ~ 23670079 (+)
AMCG00007631 NA other downstream 1059947 24192221 ~ 24194481 (+)
AMCG00007640 NA other downstream 1344213 24476487 ~ 24499650 (+)

Expression


Co-expression Network