AMCG00007589 (mesdc2,LOC107591313)


Basic Information

Item Value
gene id AMCG00007589
gene name mesdc2,LOC107591313
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23199152 ~ 23202769 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007589
CCAGCAAGCGGAGCTGTGTGCTGCTGGTACTGTGTTTGGCTTTAATATGCATTGTGGCTGCCgatgatattaaaaacaaaaaacccaaaaagaaaaaagacatcCGTGATTACAATGACGCAGATATGGCCAGGCTGTTGGAGGAATGGGAGAAGGATGATGAGATTGAAGAGGGTGACCTACCAGAGCACAAAAGAACCCCCCCACAGGTCGATTTCTCTAAAATAGATCCATCAAAGCCGGAAGAGCTCCTCAAATTGACCAAGAAAGGGAAGACACTCATGGTGTTTGCAACTGTGTCAGGAGAGCCGACTGAGAAGGAGACAGAGGAGATCACCAGCCTGTGGCAGGGCAGCCTGTTCAATGCCAATTACGACATTCAGAGGTTTGTCGTCGGCTCTAACCGTGCCATCTTTATGCTACGTGACGGGAGCTTTGCTTGGGAGGTCAAAGACTTCCTTGTGAACCAGGAACGCTGTGCAGATGTGACAGTGGAGGGGCAAGTGTACCCTGGGAAAGCAGCAAAGAAGGAtgggaaagggaaagaaaaggacCTTAATGACATAAACccagagaaaaagaagaaaaaagaagacaaGAAACCtgctaaagaaaacaacaagtccaataaaaacaagataGAGCTGTGATCCTTCCTCCTGTTGGATTGTTGGAGGCATGTCTTTTCTGGGTTTATTGCATTGCCATACAGAAATAACAGGCAGGACAGAGCACGTCTCTTTGAACACAGTTGGCTTTAATCATTGTTGGTGTATAGAGTGATGGTTTACTTTTGAGGAGGACACTTAAAGTCGATTTAAGGTAAATGAACATGGATTAGTTAGCCCTTTTGAAGATTCGCAGAGATCACATCAGTCCTGATTTTGTAAATACTAGAACTTTGTCATGGGATGAGAAAATGGTACAAGTAATCTGAAGTTTACAGCTGGTGTTAAGTGTTATGTATGTTACAGTGTTCATCGATGTTCAGTTATTCCTCACAATTTTCTTAAAATTGTTCCAGATTTTACAATTTTGTCTGGTTGTAAGTCTGTCAGTGCTTGATAGGCTCTTGTTTTTCATCTGTTGGAAAATAGTGTTTATACTTAGTGAAAAATtggcaaatgaaaacaaattgtagtTACTAAATTATGTGGGGAATTTTATTATTGGGAAATATCAGCACATGATTCTGTGGATAGCTTGTCAAATGAGGCCATATCTCCTATACCCcacccctttttctttttttattgtattaattacttttgtttgccacaaaatgtatttttgtataaaaattACTGCTATTAATCTATATcacaaaaaagcaacagcaaTGCATAGTTGCAggtataaaaatgttgtttttgtacttCTGTGAATTGCACAGCAGCTTTCAAAAAAGGCACCCGGTTCCCATAGCAATGGCAATTTTGAAGATAATGCAGTGCTGATGCATTATATCGTTCAATTATTCAAGTGCATTTAATGActaaattgttttgatttttttataatgcattgcATCTACTTATTAGgttcataatgtttttaatcattggGTCTGTGGTCCTGCAATGCCCATTTTGTGTATTCTCTTATATGAGATTGTACAATAAAGATTTTTCTCCTATA

Function

NR:

description
PREDICTED: LDLR chaperone MESD

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007589 True 1638 mRNA 0.39 3 23199152 23202769

Neighbor

gene id symbol gene type direction distance location
AMCG00007586 tmc3,LOC107736984,LOC107553743,LOC107373975 coding upstream 66878 23116851 ~ 23132274 (+)
AMCG00007580 mex3b,LOC107662268,LOC107709501,LOC107584525,LOC107685193,LOC107736985,LOC107553747 coding upstream 245634 22950692 ~ 22953518 (+)
AMCG00007581 LOC106562675,LOC102798863 coding upstream 278401 22906458 ~ 22920751 (+)
AMCG00007583 efl1,LOC102798863 coding upstream 319900 22857515 ~ 22879252 (+)
AMCG00007582 NA coding upstream 346357 22790893 ~ 22852795 (+)
AMCG00007598 NA coding downstream 184892 23387661 ~ 23387840 (+)
AMCG00007593 NA coding downstream 219247 23422016 ~ 23431721 (+)
AMCG00007605 aldh1a3,LOC106562593 coding downstream 490473 23693242 ~ 23708772 (+)
AMCG00007606 lrrk1,LOC106593346,LOC106591281,LOC106562602,LOC106593412 coding downstream 510414 23713183 ~ 23759994 (+)
AMCG00007612 NA coding downstream 702434 23905203 ~ 23919949 (+)
G24793 NA non-coding upstream 244310 22953609 ~ 22954842 (+)
G24742 NA non-coding upstream 615998 22581469 ~ 22583154 (+)
G24701 NA non-coding upstream 736600 22462124 ~ 22462552 (+)
G24700 NA non-coding upstream 737689 22460469 ~ 22461463 (+)
G24699 NA non-coding upstream 738839 22459884 ~ 22460313 (+)
G24856 NA non-coding downstream 79919 23282688 ~ 23285015 (+)
G24897 NA non-coding downstream 203190 23405959 ~ 23406837 (+)
G24898 NA non-coding downstream 204215 23406984 ~ 23425440 (+)
G24992 pcsk6 non-coding downstream 642735 23845504 ~ 23851902 (+)
G24997 NA non-coding downstream 657913 23860682 ~ 23863793 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 5631 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 59631 23133811 ~ 23139521 (+)
G24606 NA other upstream 916194 22281700 ~ 22282958 (+)
AMCG00007553 NA other upstream 932743 22263520 ~ 22266409 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other upstream 995201 22189245 ~ 22203951 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other downstream 455081 23657850 ~ 23670079 (+)
AMCG00007631 NA other downstream 989452 24192221 ~ 24194481 (+)
AMCG00007640 NA other downstream 1273718 24476487 ~ 24499650 (+)
G25822 NA other downstream 4881053 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 5235875 28438644 ~ 28454707 (+)

Expression


Co-expression Network