AMCG00007593


Basic Information

Item Value
gene id AMCG00007593
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23422016 ~ 23431721 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007593
CAAGCCAGAAACAACCGCCAGTGTAACAGTGGCCACTGCtgcttcaaaatgtatttcaacgACAACCTGCATGCGAAAAGCAGTTATTTCCACgatgaattaaacaaacaacgttaagctctttttattttagtgtttttatttgtgcaatGTTTAACACAAGCCTGCTGTTGCGCAAGTATTGTCAATAAGTAAAGTACAGATGTCCTAGTCCAATGCAAGAACTAGGATACTGTTGATGTAGCGCAGATTCCCacagttctgcgcggctccaccaatgggattcCTGGAATTGTTcagctctgcgcagaactgcggacatctgcgctagaACAACGCGGCTCATGTCAGAGAGAGGATCCAGAAGCATGGCCGCGTTACGGGCAGCCAAACAGACGCTGCGAGGCGACATCAAGAAGAAAATCGCAGCCATAGGGGATCAGGAGAAACTCCGCCAGTCGAGAATAGTTACACAAAAGctcatACAGCATCCTAAATACCAGAGCTGCGAGAGGATCGCAGTTTTCCTGAGCATGCACGACGAGGTCCAGACTGAGGAGATCATAGAAGACATCTTCAGGAAGGGCAAGGAGTGTTTCATTCCCAAATACCAGTCCAAAAGCAGCCACATGGACATGTTGAAGCTGACCGCTGCCAAAGACATCCAGTCCCTGCCGATCACATCCTGGAACATCCGCCAGCCAGGAGATGATGAGCAAGTCGAAGAGGCCTTGTCTGCAGGAGGACTGGATTTGATTCTCATGCCTGGGCTGGGTTTTGACCGAAATGGCAACCGGCTGGGTCGTGGGAAAGGTTATTATGACACCTACCTGGAGCGCTGCATGAAGCATCCCAAAGGCAAGCCCTACACCATTGGATTAGCTTTCAAAGAGCAGATCTGCGAGGCCATCCCAGTAGGTGACAACGATATAAAAATTGATGAAATCCTGCATGCGGACCAATAAACTTCAGAATCAAAAACCAAGTACTGTTCTCCTAATTGTTCCTGGAAATCTTACAAATAAAGTGCCTTTTGTGTTATTTAGCACCACCACCCCACCCACAGAACGGTCACTGGTTATATAAGAgataaattaaactgtgcaCTTAATCTTGGTCTCAGAAAGATGACTGAGGGGGAAAGTAGCTTTAACAGAAAAGCTGGGAATCCATTCCAGAGTTGAGGAAAGGCCACTCCGAGAGTGCTAAATTTCAGGTCCTATAAAGACTTTTACATTTAGGTAATTCTCCTTGACAGTTTTTACACATAGCAGATTGCctcatatacaaatatatacaaacttgGAATGACTTCCCAGCCAGGAGTTGAATCTGTGATTAACCCACAGACAGGCAGTAATTTGGTCACGCTCCTCAGTCTGTGAAACACAAGAAACACCCGCAGCTCAAAGGCTGGACGTCATCTAGCTGTGAATCTTTTATAACATTCGCTCACTTCATCActgtaattttttaattgtattttttgccaTCATGGtttcatttctctctccctgatCCAACATCTCTACTTTTCTGGCAGTGGAGGCTGAGTCACTGAACCATAAACAGGTTTGCAGAGACTATTGTTTAAGGTAGACCGTTTCTTTTGAGTATGAGCCATGTATAATTGActtgcttgttttcatttcacttaatTATTCAAGTACAATTAAAGTTGTCCATTATAGTACAGTCAGTGAGTAAAATCTTTAATGGTCTTTGAGTGATTTCTAAAAGTGAGAGACAAAAAGACTCTGatatacaatttgaaaacaattggctttgtttaatttgcctCAATTGTTCTCCCtagatttaatttgttaaaaaaacaaatgacattaaaaaaatgcacaagtCTATTCTTTGCATATTATCTATTCATCTTCAGtaattagaaaaatgtattccaag

Function

GO: NA

KEGG:

id description
K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007593 True 1917 mRNA 0.42 3 23422016 23431721

Neighbor

gene id symbol gene type direction distance location
AMCG00007598 NA coding upstream 34176 23387661 ~ 23387840 (+)
AMCG00007589 mesdc2,LOC107591313 coding upstream 219247 23199152 ~ 23202769 (+)
AMCG00007586 tmc3,LOC107736984,LOC107553743,LOC107373975 coding upstream 289742 23116851 ~ 23132274 (+)
AMCG00007580 mex3b,LOC107662268,LOC107709501,LOC107584525,LOC107685193,LOC107736985,LOC107553747 coding upstream 468498 22950692 ~ 22953518 (+)
AMCG00007581 LOC106562675,LOC102798863 coding upstream 501265 22906458 ~ 22920751 (+)
AMCG00007605 aldh1a3,LOC106562593 coding downstream 261521 23693242 ~ 23708772 (+)
AMCG00007606 lrrk1,LOC106593346,LOC106591281,LOC106562602,LOC106593412 coding downstream 281462 23713183 ~ 23759994 (+)
AMCG00007612 NA coding downstream 473482 23905203 ~ 23919949 (+)
AMCG00007614 NA coding downstream 510990 23942711 ~ 23960914 (+)
AMCG00007613 clpx,LOC107737000,LOC107594724 coding downstream 538120 23969841 ~ 23977600 (+)
G24897 NA non-coding upstream 15179 23405959 ~ 23406837 (+)
G24856 NA non-coding upstream 137001 23282688 ~ 23285015 (+)
G24793 NA non-coding upstream 467174 22953609 ~ 22954842 (+)
G24742 NA non-coding upstream 838862 22581469 ~ 22583154 (+)
G24701 NA non-coding upstream 959464 22462124 ~ 22462552 (+)
G24992 pcsk6 non-coding downstream 413783 23845504 ~ 23851902 (+)
G24997 NA non-coding downstream 428961 23860682 ~ 23863793 (+)
G25011 NA non-coding downstream 490199 23921920 ~ 23923225 (+)
G25013 NA non-coding downstream 492518 23924239 ~ 23926154 (+)
G25056 NA non-coding downstream 599313 24031034 ~ 24031304 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 228495 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 282495 23133811 ~ 23139521 (+)
G24606 NA other upstream 1139058 22281700 ~ 22282958 (+)
AMCG00007553 NA other upstream 1155607 22263520 ~ 22266409 (+)
AMCG00007554 cdc42se2,LOC107710816,LOC107577486 other upstream 1218065 22189245 ~ 22203951 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other downstream 226129 23657850 ~ 23670079 (+)
AMCG00007631 NA other downstream 760500 24192221 ~ 24194481 (+)
AMCG00007640 NA other downstream 1044766 24476487 ~ 24499650 (+)
G25822 NA other downstream 4652101 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 5006923 28438644 ~ 28454707 (+)

Expression


Co-expression Network