AMCG00007594 (zfand6,zfand5,zfand5a,LOC105015049)


Basic Information

Item Value
gene id AMCG00007594
gene name zfand6,zfand5,zfand5a,LOC105015049
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23406928 ~ 23420303 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007594
ATGTCCCTAACTGCATCAGAACAGAGGTGGGATATGGCCCAAGAGACTAACCAAACCCAGGTGCCTATGCTCTGTGCCACTGGCTGTGGATTTTATGGGAACCCGCGTACAAATGGAATGTGTTCTGTTTGTTATAAAGACTTAATGCAGAGACAGAACAGTAATGGACGAGTCAGTCCTCAAGCACCCTCTGGCATGAGCAGTATAGGAGATTCATTACCCACACAGTGCTCAGAAGGCACTACCATAGATGTCCCACCAGCAGTCTCGCCAACGGCCACAGCACTGGAACAAAGCAGTGTTGTATCCAGCCAGACTCTCTTATCACAAGCATCACTAACACATTCTGAAGAGGAAGATTCATCGGGGGACAAAATAGGGCTGAAAACAGAAGAATTACAggCTTCAGCATCTGATGACTCTGACCAAGCCTCTTCAGAAGGGCAGGACAAATCGCCTGAAAAGCccaagcaaaagaaaaaccGCTGCTTTTTGTGCCGGAAGAAAGTGGGGCTCACAGgTTTTGACTGCAGATGTGGAAACCTGTTTTGTGGCGTCCATCGATACTCTGACATTCATAATTGTACCTTTGATTACAAGGCTGATGCAGCGGAAAAAATTAGAAAAGAGAACCCCGTAGTTGTTGGAGAAAAGATTCAGAAGATTTGACCAGGCGGATTTTGTAAACACCAGCGATTTACATTGACttccccctttttattttttttggatttaattttaagtcGTTAATGGGATTTCTGAACAATTTATCATTCTTAGATTAAATCATGCATGCCATCTGGAAACTTTTTTGAAAATTCCTTTTGAAGTATTTCTTTCGAGgttatgattttatttcctgttgGACGTGATTGGTGATATCTAAGCAGACTTCAGGAGTGTTACTGTTTTATGCCGTTTTAATTTTAGGATCATACAGGACTTTCATAACAGCTAGGTGATCATACCAGAGGGCTGTGCTTTTCTGGTATctataaaaatgcatgttgtaACCTTTTGaagtcttttgtttttcctatgtATATAGCTTTTCCTCTGCAGCACGATTTCTCTTTCTAATGTGCTTTTTGAGGGCACTAATAGGTATCAATAACTGAATGTATTCTAATAATTATGGCTGCTTTTGTTctacattaacaaaaacagaaagtttcAACATATATTGGCATATTTGCTTGTTTGCCCCCAGAACTTATTTATGTCTCGAGTTATTTAGGAGAGTGTATGATGTTGAggtttaaaagtgtgtgtgtgtatgttttcttttgagtgggggggtaaaaaaagaaaagaaaaaaagagaagcctGTATGCACTTCATTGCTGGCTGTGAGTGTCATTGGGGAAAAATATAGTTCATTTATCCGAGAGTGCACAAATGAAGTATGATCTGAAAgtattgtgctgtatttatgttAGTTTATTCACTGTCTtaactttgatttaataaagttaaaaatgacaaattttATA
>TU31252
CTTGACAACTCCACTTTGGGGggtaaaaacacaatttaatgttaaaatggtaaattaaCAGCAcatagttgtattttaattgttagaGCACAACAGTATCCCAGCATGGGGCTAGGAATAAATATATAGGGAGTGTGACGTGCAAGAAGTTATATTTGACTTCTGCTGGGTGAAAATGTCAGATTTTATCAATTGGGGAAATTTGCTAAATTGCTGTGCTGTTAGTCTCAAACAAGATGACTATGCTCTAGCATTAACATGTGTTTGTAAAAAGAGATGCTATGGGTTGATTCATCAGCATTAATATAAGAGGGTATTCATGATATCCCAATACTGAACTAGCGGCGTTGAAATGTGTAAGGATATTTTATGCAAAGTGATTGTTTATGGATGTATAACGTTTCTCAACCCTTCATTTCAGAGTCTGCAGTGAGTTGTTTAGTTTCCACCGTCAGTTTTACTACCGGACGCCGTAAAACGTGTTGGGAAATCGTACAAAAAAAACACCGCACTGTACCTTTAAGATTTGTCACCGTAGGCcatttaaaggatttttttgttttagccCAACCGAACTTGTTGGATGAAAAGTTCATAACAATGATTGACGTTGCGTTGCTTCATAGAGAGGCGGCGTGGGCGGGGCGTCCAGCATATTCAGCGAATCACCATCCAGGGGGCGTGTACTTGCGTCTGAAGCCCATTGCATTTCAACATAGAGGCGACGTGGGCGTGTCGTCGGGTTATTCAGCCAATCACAATTAAGGGTGGGTGTCCAATCACCGTGAggttagattttctttttttttggctaGTGTAGTCGAGTACAATTTGGAGAATCGAGGAGAAGAGTAGAAGGGGGGGATTTGCGGACGAATTTGACGACGAGAGAGACGAACTATAGCTACAGAACAGGTGGGGCCAACAGTTGAAAGGGCATTGGCGGTCTGAAGTCAAGCAGGTGGGATATGGCCCAAGAGACTAACCAAACCCAGGTGCCTATGCTCTGTGCCACTGGCTGTGGATTTTATGGGAACCCGCGTACAAATGGAATGTGTTCTGTTTGTTATAAAGACTTAATGCAGAGACAGAACAGTAATGGACGAGTCAGTCCTCAAGCACCCTCTGGCATGAGCAGTATAGGAGATTCATTACCCACACAGTGCTCAGAAGGCACTACCATAGATGTCCCACCAGCAGTCTCGCCAACGGCCACAGCACTGGAACAAAGCAGTGTTGTATCCAGCCAGACTCTCTTATCACAAGCATCACTAACACATTCTGAAGAGGAAGATTCATCGGGGGACAAAATAGGGCTGAAAACAGAAGAATTACAggGAGGAAAATAAGACCACTGAGGAAAAATAAGGTGAAAAACGCTTCAGCATCTGATGACTCTGACCAAGCCTCTTCAGAAGGGCAGGACAAATCGCCTGAAAAGCccaagcaaaagaaaaaccGCTGCTTTTTGTGCCGGAAGAAAGTGGGGCTCACAGgTTTTGACTGCAGATGTGGAAACCTGTTTTGTGGCGTCCATCGATACTCTGACATTCATAATTGTACCTTTGATTACAAGGCTGATGCAGCGGAAAAAATTAGAAAAGAGAACCCCGTAGTTGTTGGAGAAAAGATTCAGAAGATTTGACCAGGCGGATTTTGTAAACACCAGCGATTTACATTGACttccccctttttattttttttggatttaattttaagtcGTTAATGGGATTTCTGAACAATTTATCATTCTTAGATTAAATCATGCATGCCATCTGGAAACTTTTTTGAAAATTCCTTTTGAAGTATTTCTTTCGAGgttatgattttatttcctgttgGACGTGATTGGTGATATCTAAGCAGACTTCAGGAGTGTTACTGTTTTATGCCGTTTTAATTTTAGGATCATACAGGACTTTCATAACAGCTAGGTGATCATACCAGAGGGCTGTGCTTTTCTGGTATctataaaaatgcatgttgtaACCTTTTGaagtcttttgtttttcctatgtATATAGCTTTTCCTCTGCAGCACGATTTCTCTTTCTAATGTGCTTTTTGAGGGCACTAATAGGTATCAATAACTGAATGTATTCTAATAATTATGGCTGCTTTTGTTctacattaacaaaaacagaaagtttcAACATATATTGGCATATTTGCTTGTTTGCCCCCAGAACTTATTTATGTCTCGAGTTATTTAGGAGAGTGTATGATGTTGAggtttaaaagtgtgtgtgtgtatgttttcttttgagtgggggggtaaaaaaagaaaagaaaaaaagagaagcctGTATGCACTTCATTGCTGGCTGTGAGTGTCATTGGGGAAAAATATAGTTCATTTATCCGAGAGTGCACAAATGAAGTATGATCTGAAAgtattgtgctgtatttatgttAGTTTATTCACTGTCTtaactttgatttaata

Function

symbol description
zfand6 Predicted to enable polyubiquitin modification-dependent protein binding activity. Predicted to be involved in protein targeting to peroxisome. Orthologous to human ZFAND6 (zinc finger AN1-type containing 6).
zfand5a Predicted to enable DNA binding activity and zinc ion binding activity. Is expressed in several structures, including blastomere; mesenchyme; mesoderm; notochord; and tail bud. Orthologous to human ZFAND5 (zinc finger AN1-type containing 5).
zfand5 Predicted to enable DNA binding activity and zinc ion binding activity. Predicted to act upstream of or within several processes, including face development; fibroblast migration; and platelet-derived growth factor receptor signaling pathway. Predicted to be located in cytoplasm.

NR:

description
PREDICTED: AN1-type zinc finger protein 6

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007594 False 1494 mRNA 0.39 6 23406928 23415014
TU31252 True 2446 lncRNA 0.40 8 23406952 23420303

Neighbor

gene id symbol gene type direction distance location
AMCG00007597 fah,LOC104948506,LOC106910907 coding downstream 1223 23397074 ~ 23405705 (-)
AMCG00007596 arnt2 coding downstream 39328 23325562 ~ 23367600 (-)
AMCG00007595 abhd17c,LOC106562647 coding downstream 102812 23284800 ~ 23304116 (-)
AMCG00007591 NA coding downstream 128598 23269918 ~ 23278330 (-)
AMCG00007590 cemip,LOC107591290,LOC107662322,LOC107691638 coding downstream 138028 23207302 ~ 23268900 (-)
AMCG00007599 LOC107562943 coding upstream 72252 23492555 ~ 23502919 (-)
AMCG00007601 adamts17,LOC107742308,LOC107553817,LOC107662259 coding upstream 118626 23538929 ~ 23587177 (-)
AMCG00007603 LOC103376162,LOC107563246,LOC104941826,LOC106591416 coding upstream 183030 23603333 ~ 23621762 (-)
AMCG00007602 NA coding upstream 216139 23636442 ~ 23647409 (-)
AMCG00007600 NA coding upstream 232230 23652533 ~ 23657431 (-)
G24816 NA non-coding downstream 272126 23133791 ~ 23134802 (-)
G24800 NA non-coding downstream 360555 23046113 ~ 23046373 (-)
G24797 NA non-coding downstream 452084 22954085 ~ 22954844 (-)
G24721 NA non-coding downstream 885844 22518422 ~ 22521084 (-)
G24705 LOC105889120 non-coding downstream 957974 22446370 ~ 22448954 (-)
G24905 NA non-coding upstream 3310 23423613 ~ 23437517 (-)
G24942 LOC107578340,LOC107755647,LOC107662256,LOC107742335 non-coding upstream 242589 23662892 ~ 23663540 (-)
G24943 NA non-coding upstream 247071 23667374 ~ 23670082 (-)
G24953 NA non-coding upstream 289205 23709508 ~ 23710095 (-)
G24955 NA non-coding upstream 292736 23713039 ~ 23713294 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other downstream 830474 22561496 ~ 22576454 (-)
AMCG00007565 gatm other downstream 1048482 22340599 ~ 22358446 (-)
AMCG00007500 NA other downstream 2934009 20462504 ~ 20472919 (-)
G24217 NA other downstream 3075117 20331513 ~ 20331811 (-)
AMCG00007494 NA other downstream 3184924 20171329 ~ 20222004 (-)
G25026 NA other upstream 551368 23971671 ~ 23972665 (-)
AMCG00007637 NA other upstream 842387 24262690 ~ 24281564 (-)
G25422 NA other upstream 1844029 25264332 ~ 25264951 (-)
AMCG00007684 shf,LOC108430988 other upstream 2210489 25630792 ~ 25631592 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other upstream 2633461 26053764 ~ 26070848 (-)

Expression


Co-expression Network