AMCG00007595 (abhd17c,LOC106562647)


Basic Information

Item Value
gene id AMCG00007595
gene name abhd17c,LOC106562647
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23284800 ~ 23304116 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007595
ATGAACGGTTTCTCCCTCGGCGAGCTATGCTGGCTCTTTTGCTGCCCGCCCTGCCCGAGTCGCATCGCGGCCAAGCTGGCCTTCCTGCCCCCGGAGCCCACTTACTCGGTGCAGACCGACGATGCGAACGGGACCAGCAGCCTGCATCTGAACGAGCGAGCGGACTGGCAGTACTCCCAGCGGGAGCTGGACGCGGTGGAGGTGTTCAATACCCGGACGAGCCGGGGAAACCGGGTCGGATGCATGTTCGTCCGGTGCGCCCCGAATAGTCGCTACACCTTGCTTTTTTCCCACGGCAACGCGGTGGACCTGGGCCAGATGTGCAGCTTCTACATCGGGCTGGGCTCTCGGATCAATTGCAACATCTTCTCGTACGACTACTCCGGGTATGGGGCCAGCTCTGGCAAGCCCTCGGAGAAGAACCTGTATGCAGACATTGATGCGGCTTGGCAAGCTCTTAGGACCAAGTATGGAGTGACTCCCGAGAACATAATCCTGTATGGGCAAAGCATCGGTACAGTACCCACAGTGGACCTTGCCGCCCGCTACGAATGCGCAGCTGTCATCCTCCATTCACCTCTCATCATTGATAAAGTGTCCAAGGTAGCTTCCCCAGTCCTGGTGATCCATGGCACTGAAGACGAGGTGATCGATTTCTCCCATGGCCTGGCCATCTATGAGCGCTGTCCCCGGGCGGTGGAGCCCCTGTGGGTGGAGGGGGCTGGACACAATGACATTGAACTTTACGCCCAGTACCTGGAGAGACTAAAACAGTTCATATCCTTCGAACTTCCAAACTCCTGA

Function

symbol description
abhd17c Predicted to enable palmitoyl-(protein) hydrolase activity. Predicted to be involved in protein depalmitoylation and regulation of postsynapse organization. Predicted to be located in dendritic spine; postsynaptic density membrane; and recycling endosome membrane. Predicted to be active in endosome membrane and plasma membrane. Orthologous to human ABHD17C (abhydrolase domain containing 17C, depalmitoylase).

NR:

description
PREDICTED: protein ABHD17C

GO: NA

KEGG:

id description
K01076 ABHD17; abhydrolase domain-containing protein 17

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007595 True 804 mRNA 0.58 3 23284800 23304116

Neighbor

gene id symbol gene type direction distance location
AMCG00007591 NA coding downstream 6470 23269918 ~ 23278330 (-)
AMCG00007590 cemip,LOC107591290,LOC107662322,LOC107691638 coding downstream 15900 23207302 ~ 23268900 (-)
AMCG00007592 mesdc1,LOC107709503 coding downstream 93553 23190183 ~ 23191247 (-)
AMCG00007588 NA coding downstream 111683 23169368 ~ 23173117 (-)
AMCG00007587 NA coding downstream 118123 23139522 ~ 23166677 (-)
AMCG00007596 arnt2 coding upstream 21446 23325562 ~ 23367600 (-)
AMCG00007597 fah,LOC104948506,LOC106910907 coding upstream 92958 23397074 ~ 23405705 (-)
AMCG00007599 LOC107562943 coding upstream 188439 23492555 ~ 23502919 (-)
AMCG00007601 adamts17,LOC107742308,LOC107553817,LOC107662259 coding upstream 234813 23538929 ~ 23587177 (-)
AMCG00007603 LOC103376162,LOC107563246,LOC104941826,LOC106591416 coding upstream 299217 23603333 ~ 23621762 (-)
G24816 NA non-coding downstream 149998 23133791 ~ 23134802 (-)
G24800 NA non-coding downstream 238427 23046113 ~ 23046373 (-)
G24797 NA non-coding downstream 329956 22954085 ~ 22954844 (-)
G24721 NA non-coding downstream 763716 22518422 ~ 22521084 (-)
G24705 LOC105889120 non-coding downstream 835846 22446370 ~ 22448954 (-)
G24905 NA non-coding upstream 119497 23423613 ~ 23437517 (-)
G24942 LOC107578340,LOC107755647,LOC107662256,LOC107742335 non-coding upstream 358776 23662892 ~ 23663540 (-)
G24943 NA non-coding upstream 363258 23667374 ~ 23670082 (-)
G24953 NA non-coding upstream 405392 23709508 ~ 23710095 (-)
G24955 NA non-coding upstream 408923 23713039 ~ 23713294 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other downstream 708346 22561496 ~ 22576454 (-)
AMCG00007565 gatm other downstream 926354 22340599 ~ 22358446 (-)
AMCG00007500 NA other downstream 2811881 20462504 ~ 20472919 (-)
G24217 NA other downstream 2952989 20331513 ~ 20331811 (-)
AMCG00007494 NA other downstream 3062796 20171329 ~ 20222004 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other upstream 102812 23406928 ~ 23420303 (-)
G25026 NA other upstream 667555 23971671 ~ 23972665 (-)
AMCG00007637 NA other upstream 958574 24262690 ~ 24281564 (-)
G25422 NA other upstream 1960216 25264332 ~ 25264951 (-)
AMCG00007684 shf,LOC108430988 other upstream 2326676 25630792 ~ 25631592 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000105_00154787_00207150 ABHD17C coding CI01000105 null 152831 ~ 207452 (+)
mexican tetra (Astyanax mexicanus) G239418 abhd17c,LOC106562647 non-coding NW_019171061.1 APWO02000659.1 35396 ~ 36386 (-)