AMCG00007596 (arnt2)


Basic Information

Item Value
gene id AMCG00007596
gene name arnt2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23325562 ~ 23367600 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007596
ATGGCAACACCCGCTGCCGTGAATCCATCTGAGATGGGCACTGACATTCCTGGGCCCGTGGCCCTACCAGGCGCCCCGGTTGGGGCTGGACAGGTCAGGATGGCAGGGTCCATGCCAGCCCGGGGAGGGAAGAGAAGATCAGGAGGCATGGACTTTGATGATGAGGATGGAGAAGGCCCAAGCAAATTTTCAAGGGAAAATCACAGCGAGATTGAAAGACGCCGTCGGAACAAGATGACACAGTACATCACGGAGCTGTCTGACATGGTGCCAACCTGCAGCGCCTTGGCACGCAAACCAGATAAGCTCACGATTCTGCGGATGGCCGTTTCCCACATGAAATCCATGAGGGGGACAGGAAACACATCCACCGATGGCGCTTACAAACCTTCTTTCCTAACAGAGCAGGAACTGAAGCACCTGATCTTAGAGGCGGCAGATGGCTTTCTGTTCGTGGTTGCCGCAGAGACGGGCAGAGTGATTTACGTGTCGGACTCGGTCACTCCGGTGCTTAATCACCCCCAGTCGGAGTGGTTCGGGAGCACCCTCTTCGAGCAGGTGCACCCAGACGACGTAGACAAACTGAGGGAGCAGCTCAGCACCTCGGAAAACTCCATGACTGGCCGCATTTTGGACCTGAAGACTGGTACAGTCAAGAAAGAAGGCCAGCAGTCGTCTATGAGAATGTGCATGGGATCCAGGCGGTCCTTTATTTGTAGAATGAGGTGTGGCAGTGCTCCTTTAGACCACATCTCATTAAATCGGTTGTCCAACATGAGGAAGAGATATAGGAATGGTTTGGGACCATCTAAAGAAGGCGAAGCACAGTATTCAGTAGTCCATTGTACAGGGTACATCAAAGCCTGGCCACCTGCAGGGATGACTATTCCTGATGAAGACACAGAAGCAGGACAAACCAGTAAATACTGCCTGGTTGCAATTGGAAGGCTGCAGGTCACCAGCTCACCAGTGTCAATGGACATGAACGGGCTGTCAGTTCCCACTGAGTTCCTGTCTCGTCACAGCTCAGATGGAATCATCACTTTTGTGGATCCGCGCTGCATCAATGTGATTGGGTACCAACCCCAGGTTGTCAAACTGAAAGGTCAAGTCCTCTCTGTGATGTATCGATTTCGCACAAAGAATCGGGAGTGGATGCTGATCAGGACCAGCAGCTTCACATTCCAGAATCCATATTCTGATGaaattgaatacataatttgCACCAACACGAATGTCAaGCAGctccagcaacaacaacaggcTGAACTGGAAGTACCTGTTCCTAATGTTGCCGGGGGCGTCCATGAAACCAAATCAATCGACAAAACGGACACCATGTTCTCCCAGGAAAGAGACCCACGCTTTGCTGATATGTATGCAGGGTTATCTGCTACTGACAAAAAGATGATGGCTTCGTCATCAGCAACAGGAGGCCAGCAGCTCTACTCTCAGGGCAGTCCTTTCCAACCAGGGCACACTGGGAAAAGCTTCAGCTCCTCGGTGATCCACGTCCCTGGTGTGAATGAAATTCAGCCATCTTCCTCTGCAGGACAGAACTTGGCCCAGATTTCTCGTCAGCTCAATCCAGGGCAGGTGGCCTGGACAGGCAGTCGACCTCCCTTCTCTGGTCAGCAAATCCCTGCACAGTCTGGAAAGGCCCAGTCGTCTCCTTTTGGTATTGGGTCAAGTCACAGCTACCCAGCGGACCCTTCCTCCTACAGCCCCCTCTCCAGCCCTGCCACCTCCTCCCCCAGCGGGAACGCCTACTCCGGCCTAGCCAATCGAAGCGCAGCCTTCGCTGAAGGGGGCCAGAGTGGCGGGCAGTTCCAGGGCAGGCCCTCAGAAGTGTGGTCCCAGTGGCAGAGTCAGCACCACAACCAGCAGGGCGGCGAGCAGCACGCACACCCCCAGCCCAGCCAGACCGAGGTGTTCCAGgataTGTTGCCGATGGCTGGGGATCCTACGCAGGGTACAGCCAATTACAATATTGAGGATTTCGCTGACCTGGGCATGTTTCCTCCTTTCTCTGAGTAA

Function

symbol description
arnt2 Enables DNA-binding transcription factor activity. Involved in regulation of transcription, DNA-templated; response to hypoxia; and signal transduction. Acts upstream of or within several processes, including animal organ development; neuron differentiation; and positive regulation of transcription, DNA-templated. Predicted to be located in cytoplasm. Predicted to be part of aryl hydrocarbon receptor complex. Predicted to be active in nucleus. Is expressed in several structures, including gut; hatching gland; mandibular arch skeleton; nervous system; and vasculature. Orthologous to human ARNT2 (aryl hydrocarbon receptor nuclear translocator 2).

NR:

description
PREDICTED: aryl hydrocarbon receptor nuclear translocator 2 isoform X8

GO:

id name namespace
GO:0071542 dopaminergic neuron differentiation biological_process
GO:0048798 swim bladder inflation biological_process
GO:0021591 ventricular system development biological_process
GO:0003208 cardiac ventricle morphogenesis biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0021979 hypothalamus cell differentiation biological_process
GO:0072576 liver morphogenesis biological_process
GO:0001666 response to hypoxia biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K15589 ARNT2; aryl hydrocarbon receptor nuclear translocator 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007596 True 2037 mRNA 0.54 18 23325562 23367600

Neighbor

gene id symbol gene type direction distance location
AMCG00007595 abhd17c,LOC106562647 coding downstream 21446 23284800 ~ 23304116 (-)
AMCG00007591 NA coding downstream 47232 23269918 ~ 23278330 (-)
AMCG00007590 cemip,LOC107591290,LOC107662322,LOC107691638 coding downstream 56662 23207302 ~ 23268900 (-)
AMCG00007592 mesdc1,LOC107709503 coding downstream 134315 23190183 ~ 23191247 (-)
AMCG00007588 NA coding downstream 152445 23169368 ~ 23173117 (-)
AMCG00007597 fah,LOC104948506,LOC106910907 coding upstream 29474 23397074 ~ 23405705 (-)
AMCG00007599 LOC107562943 coding upstream 124955 23492555 ~ 23502919 (-)
AMCG00007601 adamts17,LOC107742308,LOC107553817,LOC107662259 coding upstream 171329 23538929 ~ 23587177 (-)
AMCG00007603 LOC103376162,LOC107563246,LOC104941826,LOC106591416 coding upstream 235733 23603333 ~ 23621762 (-)
AMCG00007602 NA coding upstream 268842 23636442 ~ 23647409 (-)
G24816 NA non-coding downstream 190760 23133791 ~ 23134802 (-)
G24800 NA non-coding downstream 279189 23046113 ~ 23046373 (-)
G24797 NA non-coding downstream 370718 22954085 ~ 22954844 (-)
G24721 NA non-coding downstream 804478 22518422 ~ 22521084 (-)
G24705 LOC105889120 non-coding downstream 876608 22446370 ~ 22448954 (-)
G24905 NA non-coding upstream 56013 23423613 ~ 23437517 (-)
G24942 LOC107578340,LOC107755647,LOC107662256,LOC107742335 non-coding upstream 295292 23662892 ~ 23663540 (-)
G24943 NA non-coding upstream 299774 23667374 ~ 23670082 (-)
G24953 NA non-coding upstream 341908 23709508 ~ 23710095 (-)
G24955 NA non-coding upstream 345439 23713039 ~ 23713294 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other downstream 749108 22561496 ~ 22576454 (-)
AMCG00007565 gatm other downstream 967116 22340599 ~ 22358446 (-)
AMCG00007500 NA other downstream 2852643 20462504 ~ 20472919 (-)
G24217 NA other downstream 2993751 20331513 ~ 20331811 (-)
AMCG00007494 NA other downstream 3103558 20171329 ~ 20222004 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other upstream 39328 23406928 ~ 23420303 (-)
G25026 NA other upstream 604071 23971671 ~ 23972665 (-)
AMCG00007637 NA other upstream 895090 24262690 ~ 24281564 (-)
G25422 NA other upstream 1896732 25264332 ~ 25264951 (-)
AMCG00007684 shf,LOC108430988 other upstream 2263192 25630792 ~ 25631592 (-)

Expression


Co-expression Network