AMCG00007597 (fah,LOC104948506,LOC106910907)


Basic Information

Item Value
gene id AMCG00007597
gene name fah,LOC104948506,LOC106910907
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23397074 ~ 23405705 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007597
ATGGCTGCAGTCACACACATCTGTAAGAGTTTACTATTTGTGCTGCTAACACTGAGGATCATCCCGCAGCAGCACTGCAATTATAAAATGTCTTTCATAAAAGTGGACGAAACATGCGATTTCTCTATTCACAATCTTCCCTATGGCGTGTTTTCGACTCCGGATAATCCACGACACCGGATTGGTGTTGCAATAGGAGATCAGATACTGGACCTAAGCGTCATCAAGTCTCTTTTCACAGGGCCAGCACTGTCAACACATCAAGATGTTTTTAGCCAGTCAACGCTCAATGCATTCATGGCGCTGGGACCCGCAGCCTGGCAGGAGGCCAGACGAGTACTTCAAAAACTGCTCTCTGCTAACGAGGCCACTCTTCGAGACGATGTGAGCTTGAGAAGCAGAGCATTTGTGCATCAAAGCCTAGCAGAGATGCATCTCCCAGCTGAAATTGGTGAGCTGAGGTTGCCGGTGGGTTACCATGGCAGAGCCTCCTCTGTGGTGGTGTCAGGCACTCCTCTCAGGAGGCCCCAGGGACAGATGAGACCAGACCCAACACAGCCTCCTGTATTCAGTCAATGCAAACAGCTTGACATTGAATTAGAAATGGCATTTTTGGTAGGTCCAGGAAACAAACTTGGAGAGCCAATCCCCATTGACAAGGCCCATGAACACATCTTTGGAATGGTTCTGATGAATGACTGGAGCGCCCGTGATATTCAGGCATGGGAATACGTTCCTCTGGGTCCATTCCTGGGAAAGAACTTTGGGACGACCATTTCCCCCTGGGTTGTCCCAATGGAGGCACTGATGCCTTTTGTTCTGCCAAATGCAGTTCAGGATCCAAAGCCACTACCCTATCTGTGCCATGAGGATCCTTACACCTTTGACATCAATCTCTTCGTCTCCGTGAAAGGAAAAGCAATGGAAGAAGCTGCAACAATAAGCAAGTCAAATTTTAAGtacATGTATTGGACAATGAAACAGCAACTGGCACATCACTCTGTCAATGGCTGTAATCTCCGGCCCGGTGATCTCTTGGCTTCAGGGACAATCAGTGGACCCGACCCTGAAAGTTTTGGTTCAATGTTAGAATTATCATGGAggggaacaaaaacaattgatcTGGGAAATGGAGAGACTCGCAAGTTTCTGGAAGATGGGGATGAAGTCTACCTCACA

Function

symbol description
fah Predicted to enable fumarylacetoacetase activity. Predicted to be involved in L-phenylalanine catabolic process; homogentisate catabolic process; and tyrosine catabolic process. Predicted to act upstream of or within aromatic amino acid family metabolic process. Is expressed in epidermis; fin; head mesenchyme; liver; and pharyngeal arch 3-7 skeleton. Human ortholog(s) of this gene implicated in tyrosinemia type I. Orthologous to human FAH (fumarylacetoacetate hydrolase).

NR:

description
PREDICTED: fumarylacetoacetase

GO: NA

KEGG:

id description
K01555 FAH, fahA; fumarylacetoacetase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007597 True 1179 mRNA 0.48 12 23397074 23405705

Neighbor

gene id symbol gene type direction distance location
AMCG00007596 arnt2 coding downstream 29474 23325562 ~ 23367600 (-)
AMCG00007595 abhd17c,LOC106562647 coding downstream 92958 23284800 ~ 23304116 (-)
AMCG00007591 NA coding downstream 118744 23269918 ~ 23278330 (-)
AMCG00007590 cemip,LOC107591290,LOC107662322,LOC107691638 coding downstream 128174 23207302 ~ 23268900 (-)
AMCG00007592 mesdc1,LOC107709503 coding downstream 205827 23190183 ~ 23191247 (-)
AMCG00007599 LOC107562943 coding upstream 86850 23492555 ~ 23502919 (-)
AMCG00007601 adamts17,LOC107742308,LOC107553817,LOC107662259 coding upstream 133224 23538929 ~ 23587177 (-)
AMCG00007603 LOC103376162,LOC107563246,LOC104941826,LOC106591416 coding upstream 197628 23603333 ~ 23621762 (-)
AMCG00007602 NA coding upstream 230737 23636442 ~ 23647409 (-)
AMCG00007600 NA coding upstream 246828 23652533 ~ 23657431 (-)
G24816 NA non-coding downstream 262272 23133791 ~ 23134802 (-)
G24800 NA non-coding downstream 350701 23046113 ~ 23046373 (-)
G24797 NA non-coding downstream 442230 22954085 ~ 22954844 (-)
G24721 NA non-coding downstream 875990 22518422 ~ 22521084 (-)
G24705 LOC105889120 non-coding downstream 948120 22446370 ~ 22448954 (-)
G24905 NA non-coding upstream 17908 23423613 ~ 23437517 (-)
G24942 LOC107578340,LOC107755647,LOC107662256,LOC107742335 non-coding upstream 257187 23662892 ~ 23663540 (-)
G24943 NA non-coding upstream 261669 23667374 ~ 23670082 (-)
G24953 NA non-coding upstream 303803 23709508 ~ 23710095 (-)
G24955 NA non-coding upstream 307334 23713039 ~ 23713294 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other downstream 820620 22561496 ~ 22576454 (-)
AMCG00007565 gatm other downstream 1038628 22340599 ~ 22358446 (-)
AMCG00007500 NA other downstream 2924155 20462504 ~ 20472919 (-)
G24217 NA other downstream 3065263 20331513 ~ 20331811 (-)
AMCG00007494 NA other downstream 3175070 20171329 ~ 20222004 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other upstream 1223 23406928 ~ 23420303 (-)
G25026 NA other upstream 565966 23971671 ~ 23972665 (-)
AMCG00007637 NA other upstream 856985 24262690 ~ 24281564 (-)
G25422 NA other upstream 1858627 25264332 ~ 25264951 (-)
AMCG00007684 shf,LOC108430988 other upstream 2225087 25630792 ~ 25631592 (-)

Expression


Co-expression Network