AMCG00007599 (LOC107562943)


Basic Information

Item Value
gene id AMCG00007599
gene name LOC107562943
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23492555 ~ 23502919 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007599
ATGGATCCAACACCAGAGTATTCTCTCTTCCTGGTGAGGATTTTGGAAGAGCTGGACACCAAACAGAGCAGTGTTTCTTACCAGGATCTGTGTAAATCTTTATGTGCCAGATTTGACTTGGCTCACTTAGCCAAGCTCAGGAGCCTGCTGTTTTACACAGCCTGTCTGGACCCCAGTTTCCCTGCCACTTTGTTCAAAGACAAGATGAGGTGTTCAATGGATGACCAGCAATCCAAGAAAATAATGGTAGCCGCAGACATAGTTACCATGTTCAATTTAATTCAGATGAATGGTGGGGCTGCCAAAGACAAATTACCCATTGGACATCGGCCAAAATTCCATAAGAATCAATCTTTTGAGTCTTGTCGATCGGATACTGACATATGCAAGTATTCTGACTGTGAAAGAGCCTACAACTTCTTAGACGTGAGAGGACATTCCTCTTCACGGACCTCACCTTGTCCCAAACCGGAGTGCAACAACTCTCAGCATTTCATTCGCACCTCCGATCCCAATTTCCTGCTGGGGGTTAACAAGGAAATGAAATGCCGTGCAGCTTCACTTGACAAgcttcagcttctaccacagtATTCGAGCAGCAGCTCTCAGCCTTGTGAAATGCAGAGCACCTACTTTCCAATGGATATAGACAGCGAATCAACAACGGATCAGGACTCCTTGCATGTAAATTCAGGGATCAAAGAAAGTTTCATTTCCAATTCTGAGCCTTTTACAGTACACTCGTGTGTGCAGAAGAGAAATATTTTCAAGGAGGACTTCCACAACCTTGTGGCGTTTACTCCCCAGGTAATCACCACAGATTCTAAGCCAAGTGATAAACTATCTGGGGGGTATCACAGAAAGGAGTCCCACAAGCCTGCTACCTTTTTTAATCACAGTTTTGAACTGCCATACAGCAACCCATATTATGAGCCAATATGTTCACCTGCTCAAGAAAAAAGACGGGCAAAGCATGAGAGTCTGGATGATCTGCAGGCATCTACCTACTTCGGACCAACGACTGTAACAGAAAACGTGAATCCGAGAAGGTCTTCAGgaaaacataacaaacaacCAGCCTGGCCTGTCAAAAGCTTGAGTCTGAACACAGAAGAAGGACCTGATTTTGAAAGATCTTTCTTAAATGCTAAACAGCCCAAAGACAATCATCGTCACAATGGCGGCAATATGGATAAAGAACAGCACTATCAATGCCCCAAAGAGCAGACAGTGATCTCTCCTTCAGGATTTGCCATTAAATCAAATGGGTCAAAAACAAAAGAGTCAAATTCAATGTCAAGTGGCTCTGGTGTGGATAAAAGAGAAGGCGTGAAAAGGTTTAAAGACAAAAGCATTAACTGTACATCTTTCCAAGTGATGAATGTAGACACTACCTTAAGTGTGGGAACCCAAACGGACCAATCAGATCAGAGAAAGTTGAAAGACTTTTCCAATCCTAATCACACAAAGTATGTTGAAAGGCATTCCTTCAAACACTCTGATGAGGACTCTGAAGTGGTCAGCGATGACATTAGTGACATCTTTCGATTTTTGGATGACATGAGTGTCTGTGGTTCCTCTGGAGTCATTCAGTCATCATGCTACAATAGCAATGGGTCCCTCTCTCAGGTGACAAAGTCAGACGGAGATAGTTCACCTGAGCAGAGTACCGTGAAAGCAGGTAAATCTGGCAACAAGTTAGACAAACTATTTAATTCTCTAGAAAGTACGGATGATGAGCTAAAGGTCAGTGTCTGTAAGCTGGTTCTCCGGATTGGTGAGATTGAGAAAAAGCTTGAAACTCTTTCTGGGGTGCGAGATGAGATCTCCCAGGTCCTTGCAAAGCTAAACAAATTAGATGAAAAGATCCAGGAACCAGACGCAAACAGCCGGCAGATTGAACCGGATATGGCCTGTGAGCTGCATTCAGATGGCAGTGTGTCCCCAAGAGTCTTCCAGTGTCACACCACTGGGCATGCCGTCAAACTGGACAACAACACTGAGTGGTGCTGCTCAGATGCCAGTGGGAGTAACAGTGAAAGTCTGAGGGTTAAAGCCTTGAAAAAGAACTTGTTCACAAGGAGGTCCTCAAGATCACTAACTGAAGAGAACAGTGCAACCGAATCCAAAATTGCCAGTATCTCCAATTCTCCCCGAGACTGGAGAGCTATCTCCTACTCTAGCCACCCTGGGGATgaggtgaaagaaaaagacagggACAGCAAGGACAGGCACAGAAAATCCAAAGAgACAGACCGGCAGTATGAGATTCCCCAGGCACACCGGTCCTCCAAGCAGCCAAAAGATTCCTACTTGATAGAGCAAGTGTTCAGTCCTCACCCCTTCTCAACGTCGGCCAAATCACACATGAAGAGCAACCCCCTGTACACAGACATGAGACTGACAGAGATGTCAGAGGCGAAGCGGCCCCAGCCATCGTGGACAATCGAGGAATACAAAAGAAACTCAGGAGAAAAGGGCAAGCTCACAGCCTTGGACCTGCAAACTCAAGAGTCCTTAAACCCAAACAATTTAGAGTACTGGATGGAGGATATTTACACTCCTGGCTATGACTCTCTACTCAAGCGCAAAGAGGCCGAGTTCAGGAGGGCAAAGGTTTGTAAGATCGGAGCACTGATTGCAGCAGCAGCCTGCACTGTAATCTTGGTCATAGTTGTCCCGATTTGCACTATGAAATCCTAA

Function

NR:

description
PREDICTED: UPF0258 protein KIAA1024-like

GO: NA

KEGG:

id description
K24829 MINAR1; major intrinsically disordered Notch2-binding receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007599 True 2703 mRNA 0.45 3 23492555 23502919

Neighbor

gene id symbol gene type direction distance location
AMCG00007597 fah,LOC104948506,LOC106910907 coding downstream 86850 23397074 ~ 23405705 (-)
AMCG00007596 arnt2 coding downstream 124955 23325562 ~ 23367600 (-)
AMCG00007595 abhd17c,LOC106562647 coding downstream 188439 23284800 ~ 23304116 (-)
AMCG00007591 NA coding downstream 214225 23269918 ~ 23278330 (-)
AMCG00007590 cemip,LOC107591290,LOC107662322,LOC107691638 coding downstream 223655 23207302 ~ 23268900 (-)
AMCG00007601 adamts17,LOC107742308,LOC107553817,LOC107662259 coding upstream 36010 23538929 ~ 23587177 (-)
AMCG00007603 LOC103376162,LOC107563246,LOC104941826,LOC106591416 coding upstream 100414 23603333 ~ 23621762 (-)
AMCG00007602 NA coding upstream 133523 23636442 ~ 23647409 (-)
AMCG00007600 NA coding upstream 149614 23652533 ~ 23657431 (-)
AMCG00007611 chsy1,LOC107742304,LOC107755644,LOC107662251,LOC107691970,LOC107553812 coding upstream 269813 23772732 ~ 23781085 (-)
G24905 NA non-coding downstream 55038 23423613 ~ 23437517 (-)
G24816 NA non-coding downstream 357753 23133791 ~ 23134802 (-)
G24800 NA non-coding downstream 446182 23046113 ~ 23046373 (-)
G24797 NA non-coding downstream 537711 22954085 ~ 22954844 (-)
G24721 NA non-coding downstream 971471 22518422 ~ 22521084 (-)
G24942 LOC107578340,LOC107755647,LOC107662256,LOC107742335 non-coding upstream 159973 23662892 ~ 23663540 (-)
G24943 NA non-coding upstream 164455 23667374 ~ 23670082 (-)
G24953 NA non-coding upstream 206589 23709508 ~ 23710095 (-)
G24955 NA non-coding upstream 210120 23713039 ~ 23713294 (-)
G25014 NA non-coding upstream 421320 23924239 ~ 23926237 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other downstream 72252 23406928 ~ 23420303 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other downstream 916101 22561496 ~ 22576454 (-)
AMCG00007565 gatm other downstream 1134109 22340599 ~ 22358446 (-)
AMCG00007500 NA other downstream 3019636 20462504 ~ 20472919 (-)
G24217 NA other downstream 3160744 20331513 ~ 20331811 (-)
G25026 NA other upstream 468752 23971671 ~ 23972665 (-)
AMCG00007637 NA other upstream 759771 24262690 ~ 24281564 (-)
G25422 NA other upstream 1761413 25264332 ~ 25264951 (-)
AMCG00007684 shf,LOC108430988 other upstream 2127873 25630792 ~ 25631592 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other upstream 2550845 26053764 ~ 26070848 (-)

Expression


Co-expression Network