AMCG00007601 (adamts17,LOC107742308,LOC107553817,LOC107662259)


Basic Information

Item Value
gene id AMCG00007601
gene name adamts17,LOC107742308,LOC107553817,LOC107662259
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23538929 ~ 23587177 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007601
ATGTCATTGGAATTAATGGTATTAAAGCTGGTAGAAACAGCCACGAAAGCCTTGCATTATACACTGGTTTTGCACACAGCTAATGTAAattggtgggtggggtggggggagaaacATCCAAAGATAAAcattgtgtggaaaaacaaaacggtGGTTATGGCATGTATTTTTGACAAATTACAAGCTTGTATAAAAACTGCAAACTGCACAATTTGGTTGGGTTACAGGGGCAGTGGTCTCTGTTGTTTACTGACTGCTGACTGTTGTTTTACTGTCTGTCCAATAGGAATTGCCTATCTGGGAGGAACCTGCAGCTCCAAGAGGCAGTGTGTCCTGGCTGAAGATAATGGGCTCAACCTGGCCTTTACTATCGCTCATGAGCTTGGCCACAACATGGGTATGAACCACGATGATGACCATCCGACGTGCACGGGACACTCTCATATCATGTCCGGGGAGTGGGTGAAGGGCAGGAACCCCAGCGATCTTTCCTGGTCCTCCTGTAGTCGAGATGACTTGGAGAACTTCCTGAGGTCGAAGGCCAGTGCCTGCCTGCTGGCGACGGATCCTCGGAGCCGCTATGTGGTGAAGCTGCCTCCCAAGCTGCCAGGCATGCACTACAGCGCGGACGAGCAATGCCAGATTTTGTTTGGCACGAACGCAACATTCTGCAACAATATGGAGcaTCTAATGTGTGCTGGTTTGTGGTGTCTGGTGGAGGGAGACACGTCCTGCAAAACCAAGTTAGATCCTCCTCTGGATGGAACTGAATGCGGTGCTGACAAGTGGTGCCGGGCTGGAGACTGTGTCAGTAAGACCCCCATCCCTCAGCACGTGGACGGAGACTGGAGTTCCTGGAGCCAGTGGAGCATGTGCAGCCGGACGTGTGGTACAGGAGCCAGGTTCAGACAGAGGAAGTGTGACAATCCACCCCCGGGGCCGGGAGGGAAGAACTGTCAGAAGGCCAGTGTGGAGCACGAAGCCTGTGAAGGCCCTCCGTGCGCGAAGGGCGTTCCCACCTTCAGGGACCAGCAGTGCCAGTCCCAAGACCGGCAAGCCAGCAAGAAGAAGGCCAGCATGTGGATAGCAGTCATTAATGACGagaaGCCGTGTGCCCTGTTCTGCAGTCCCCTGGGGCGAGACTCGCCCAGCTTATTGGCTGAGAGAGTCTTAGATGGCACTCCATGTGGACCGTATGAGAGCGACCTCTGTGTGAATGGAAAATGCCAGAAAATTGGCTGCGATGGAATCATTGGCTCCTCGGCCAAAGAGGACCGCTGTGGTGTGTGCAATGGAGATGGCAAATCCTGCAAGATAGTAAAGGGAGATTTCAGTCACACCAAAGGAACGGGTTACGTCGAAGCAGCTGTCATTCCGGTCGGCGCTCGGCGCATCAAAGTGGTGGAGGACAAACCATCTCACAGCTTTCTCGCTTTAAAAGACTCCAGCAAGAGATCCATCAACAGTGACTGGAAGATCGAGCTTCCTGGAGAGTTCCAGCTAGCTGGCACCACTGTGCGCTACGTGAGGAGGGGACTCTGGGaaaaaatgtctgccaagggacCCACTAAAACACCCCTGCATCTGATGGTTCTGATGTTCCATGACCAGACCTACACGATACACTACGAGTATACCATCTCGCTGAACCAGACGGTGGAGAACCGGAGCGAGCCTGTGCGAGAACTGGAGCCGCTGTACATctggacacacagcagctggGAGGACTGCAGCCTCCAGTGTGACGGAGGGGAGAGGAAAACTATTGTCTCCTGCATGAAGATCgtcaacaaaacaacaaccctgGTGAACAATAGCAACTGTCGGATCGAGAATCGGCCCGCCCCCCAGATCAGACGTTGTAACATGCATCCCTGCCAGTCACGGTGGGTGACAGGTGAGTGGGGTCCATGTTCCCTGACCTGTGGGAAAGGGCTCCAGCTGAGGGAGGCATCTTGTGTGTATCAGCTGCAGAACGGCTCCTACATCAACACACGTGATCTGTACTGCCAGGGGCCCAAGCCAGCTGTGGTACAGAGCTGTGAAGGCCGTGATTGTCTGACAGTCTGGGAAGCGTCTGAATGGTCCCAGTGCTCCACAGACTGCGGCAGAGGTACCCACAAGAGGACTGTGACCTGCACAAACCCCCAGGGGAAATGTGACCCCGCCACTAGGCCCTCCGAGCAAGAGGAGTGTGAGGATCACTCCAAGTGTAACGAGTGGAAAACGGGAGACTGGTCAAAGTGCTCATCGTCTTGTGGGAAGGGTTTGCAGTCCCGAGTTGTTCAGTGTATGCACAAAGTGACCGGGCGCCATGGCAACGACTGCCCGGTTGTGTCGAAGCCACCAGCTTACAGACCGTGCCACCAGGAGGCGTGCAACGAGAAAGTCAATGTGAACACAATCACATCACCCAGACTTGCTGCTCTCACGTACAAGTGCACAGGGGACCAGTGGACTGTCTACTGCAGGGTGATTCGAGAGAAGGACCTGTGTCAAGATATGAGGTGGTATCAACGCTGCTGTCAAACCTGCAGGGACTTTTATGCAAGCAAAATGCATCAAAAGAGTTAATGGCACCTTTGGTTTGTGCCATttcttcacttttatttttttcctttttttattatgaagcaTAGGGATGTTGcaaatttaaaaccattaaatacatatataaaatgaacaaactgAATGACATGAAAGTGCAAATGGAGTCCAAAGCTTACCTTTTTAATGActtgaacctttttttttttggctgtaCCACCAAAGTTGTAACATTTTGCAAACTTCTTTCCTGAAGAAGTCATCTCCAGGATCCCATCGTGTGAAAGGCTTTTGTACAGTATGCTTGACATCACATCTTTAAATGAAGGCTTCCAGCCAACCCTGTCTTCCACAAGCCACTGGCTGGCCAGTAACCCAAGATAGGGGAACATGAGTTCCATTGTcaggttgttattattattattattattattattattattattattattattattattattatta

Function

symbol description
adamts17 Predicted to enable metalloendopeptidase activity. Predicted to be involved in extracellular matrix organization. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in several structures, including digestive system; eye; heart; pleuroperitoneal region; and thymus. Human ortholog(s) of this gene implicated in Weill-Marchesani syndrome. Orthologous to human ADAMTS17 (ADAM metallopeptidase with thrombospondin type 1 motif 17).

NR:

description
PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 17

GO: NA

KEGG:

id description
K08631 ADAMTS17; a disintegrin and metalloproteinase with thrombospondin motifs 17

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007601 True 3015 mRNA 0.51 16 23538929 23587177

Neighbor

gene id symbol gene type direction distance location
AMCG00007599 LOC107562943 coding downstream 36010 23492555 ~ 23502919 (-)
AMCG00007597 fah,LOC104948506,LOC106910907 coding downstream 133224 23397074 ~ 23405705 (-)
AMCG00007596 arnt2 coding downstream 171329 23325562 ~ 23367600 (-)
AMCG00007595 abhd17c,LOC106562647 coding downstream 234813 23284800 ~ 23304116 (-)
AMCG00007591 NA coding downstream 260599 23269918 ~ 23278330 (-)
AMCG00007603 LOC103376162,LOC107563246,LOC104941826,LOC106591416 coding upstream 16156 23603333 ~ 23621762 (-)
AMCG00007602 NA coding upstream 49265 23636442 ~ 23647409 (-)
AMCG00007600 NA coding upstream 65356 23652533 ~ 23657431 (-)
AMCG00007611 chsy1,LOC107742304,LOC107755644,LOC107662251,LOC107691970,LOC107553812 coding upstream 185555 23772732 ~ 23781085 (-)
AMCG00007607 chsy1,LOC106587790,LOC106562599 coding upstream 231865 23819042 ~ 23821475 (-)
G24905 NA non-coding downstream 101412 23423613 ~ 23437517 (-)
G24816 NA non-coding downstream 404127 23133791 ~ 23134802 (-)
G24800 NA non-coding downstream 492556 23046113 ~ 23046373 (-)
G24797 NA non-coding downstream 584085 22954085 ~ 22954844 (-)
G24721 NA non-coding downstream 1017845 22518422 ~ 22521084 (-)
G24942 LOC107578340,LOC107755647,LOC107662256,LOC107742335 non-coding upstream 75715 23662892 ~ 23663540 (-)
G24943 NA non-coding upstream 80197 23667374 ~ 23670082 (-)
G24953 NA non-coding upstream 122331 23709508 ~ 23710095 (-)
G24955 NA non-coding upstream 125862 23713039 ~ 23713294 (-)
G25014 NA non-coding upstream 337062 23924239 ~ 23926237 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other downstream 118626 23406928 ~ 23420303 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other downstream 962475 22561496 ~ 22576454 (-)
AMCG00007565 gatm other downstream 1180483 22340599 ~ 22358446 (-)
AMCG00007500 NA other downstream 3066010 20462504 ~ 20472919 (-)
G24217 NA other downstream 3207118 20331513 ~ 20331811 (-)
G25026 NA other upstream 384494 23971671 ~ 23972665 (-)
AMCG00007637 NA other upstream 675513 24262690 ~ 24281564 (-)
G25422 NA other upstream 1677155 25264332 ~ 25264951 (-)
AMCG00007684 shf,LOC108430988 other upstream 2043615 25630792 ~ 25631592 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other upstream 2466587 26053764 ~ 26070848 (-)

Expression


Co-expression Network