AMCG00007609 (pcsk6,LOC107662249,LOC107742302)


Basic Information

Item Value
gene id AMCG00007609
gene name pcsk6,LOC107662249,LOC107742302
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23845592 ~ 23886667 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007609
CCACTTCTTTTCTggttcaactttatttttctctctatgtatgtatgtatgtatatatatatatatatatatctatctatctatctatctatatctatctatctaaaaCCTATATCACCCTGagaatgtgaaaacaaatctgtcagcagcagcagcagcaacaacaacaacaacaacaacaacaacaagaaatcGTGGTCCAACGCTATGTactattttcatataaattaaagaaccttttattttcctagctatgattttttaattattagtattattaggcGACCGTTTTAAGCATCAGGATAACTTAATCTAGTGAAAACATGCATCTGAGttggatttttgtgtttttcacttttttgattGGCCAGACCTGGTCTTCTCGACACGTTTATACGAATCACTGGGCTGTGCGCATTTCAGGGGGACACGGAGAAGCTGATAAACTTGCTACAAAATATGGCTATAATAATTTAGGCCAGATTGGAAGCTTGGAAGATCATTATCATTTTCATCACAGCAAAGTTGTAAAAAGATCTGCCTTCTCTACAAAGGGCACTCACAGCTTCATCCACATGGACCCAAAGGTTCATTGGATCCAGCAGCAAGTCGTCAAAGCCCGGGTGAAAAGGTACACCAGGAACGATCTCAATTTCGTCCACTTCAACGATCCCAAGTGGTCTAACATGTGGTATATTCACTGTGGTGACAAGGGCAGTCGTTGCCGTTCAGAGATGAACATTCTGGCGGCGTGGCAGAGGGGCTACACGGGCAAGAACGTGGTTGTGACCATCTTGGATGATGGCATTGAGAGGAATCACCCGGACCTGGCACAGAATTATGATCAGCTTGCGAGCTATGATGTCAACGGGAATGACCATGACCCCACTCCTCGCTATGATTCCAGCAATGAAAACAAACACGGCACACGGTGTGCTGGGGAAGTGGCAGCTGTGGCGAATAACTCCCACTGCATTGTTGGTATAGCGTACAATGCACGGATTGGAGGCATTCGGATGTTGGATGGGGATGTAACAGATGTAGTGGAAGCGAAGTCTCTTGGCATCAGACCAGACTACATTGACATTTACAGTGCCAGCTGGGGGCCAGATGACGATGGGAAGACGGTGGATGGGCCCGGTCCTCTCGCCAAGCAGGCCTTTGAGCTGGGCATTAAGAAGGGCCGGAAGGGACTGGGCTCGATTTTTGTTTGGGCTTCTGGGAATGGTGGCAGACAGGGGGACCACTGCTCCTGTGATGGCTACACCAACAGCATCTACACCATCTCTGTGAGCAGCACCACTGAGAATGGCAACAAACCCTGGTACCTGGAGGTGTGCTCCTCCACTCTGGCCACAACCTACAGCAGTGGAGAATTTTATGACCGGAAAATAGTCACCACAGACCTTCGCCAGCGTTGCACTGATGGCCACACAGGGACCTCTGTCTCTGCCCCCATGGTTGCTGGTGTCATTGCTTTGGCTCTGGAAGCCAACCCTTTAATAACTTGGAGAGACGTCCAACATCTTCTGGTGAAGACTTCTCGGTCTGTTCACCTGAAAGCAAATGACTGGAAGACCAACGCAGCCGGCCACAAAGTCAGCCATCTGTACGGCTTTGGATTGGTCGATGCAGAAGCCATGGTTGTTGAAGCAAAGAAGTGGAGGACTGTGCCGCCCCAGCACATCTGCACCAAGACCTCTGACAGGAGAACCAGGTACATCCGGGCCGACCAGTACCTCAATACCACCATTACGACATCGGGTTGTGCCGAGCAGCTGGAGAATCACGTGGTGTATCTGGAGCACGTCATAGTGAGGGTCCTCGTAGTGCATCCTCGCCGTGGGGACCTGCAGATCAACCTCATCTCCCCGTCGGGCACCAAGTCACAGCTTCTGGCAAAACGATTGTTTGATAACTCTAACGAAGGTTTCAAAAACTGGGAGTTCATGACCGTGCACTGCTGGGGAGAGAAGGCTGAGGGACTGTGGACTCTGGAGATACTTGACTCTCCATCACAGCTGCGCAACCCTGAAGTTCTGGGCAAACTGAAAGAGTGGACCCTCACCCTGTACGGAACCACAGAGCATCCTTACCACTCCCAGAGCTCCCATCACTCCCGCTCCAGGATGCTAGAGATCCCCAGCCCAGACCAGGAGCATTGGGGGCCTGAGACGCTGCAGGAGGTcccagaagaggaggaggaggagtacaATGGGTCGTGCCATTCTGAGTGTGGAGACCAGGGCTGCGATGGGCCAGATGCTGAGCACTGTTTGAACTGCATTCATTTCAGCCTAGGGAACATCAAGTCTGGCAGGACCTGTGTCAGCCACTGTCCCCTGGGGTATTATGAAGACGCAGAGGCGCGGCGATGCAGACGGTGCTTTAAGGGCTGCGAGAAGTGTGTGGGCCGGGCGCACAATGAGTGCACGTCCTGCAGAAGTGGGCTGTACCTGTATGCTGAGGAGAGCACCTGTGTAGACACATGCCCCGTGGGCTTTTTTGCAGATGAAATTCAGAAGCAGTGCTTGAAATGCCATCAAAATTGCATGAAATGTCTCCGGGACTCTGACAGGTGCACAGTTTGCCACGATGGATTCAGCCTGGCTGGGATGACCTGTGTTCCCGAATGCGCTGATGGGACCTTCTTCAACCTGGAGGAGATGAAGTGCAGCACCTGTCACATGTCCTGCTCCACCTGCACAGGGCCTGGGAAGGAAGAATGCATCCAGTGTGCCAAAGACTTCCTGCTGCAGGAGTGGAAATGTGTCTCGGCGTGCACGGAGGGCTACTACCCCGGGGAGGCTGCGGGATTGCCTCAGCAGATCTGCCGCAAatgtGAAGATAATTGTTTGATTTGCCATGGCCCTGGAAGGAACTGCTTAAAATGCAAAGATGGCTACAATTTAGTCAGTGGAACATGCATTGTGAATGCCACCTGTAATAATGCTGACGAGGTGTTCTGTGAGATGGTGAAATCCAACCGGCTGTGCGAGAAAAAGCTCTTTCGACAGTTCTGCTGCCGGACGTGTTTAATGACAGGATGAAGATTAATTGCCCAGTGGGAGAGTGATGGACACTTTTCAGACTTTGACTCCATGATATGTTGTAGATTTTTTAACTGGTAAACTTCTTTCcgtaagaaaaaacaaaacaaaacatttctacaACTGAATAAAGGAATTCTTTAAggtgcatgttttaatttgaataaaatatatttttaaggctGTCCATTTTTATAAACTGTACACATAAcatgacaacatttttttttttttttttttttttttaatccaagcTGCATAATTATAAAGATGTGGTGCTTTTTATGACTATAAATGACCGTGTATGAGTTTTTGAACCACTGTATTCAGGTGTGAATCAATAACATAACTTTCAGTATGAAttggtttataaataaacagtactTGTAAAGTTAGCTTTTTCATACTTTAAAAATTGAATAtcgtttaaaaatgtatatgctttAAGGATTTTGTTAAAGGATTGTAGCTTTtgtaagaaaaagaaacagaaagctGTTCAATGGACTAGATTAATTCTGTTGTAAATTTTAGACAATTTTatggtttgtctttttttattttgtttctgtaaaatccAATGTTTGTAAGacccaaattaaaatatata

Function

symbol description
pcsk6 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Orthologous to human PCSK6 (proprotein convertase subtilisin/kexin type 6).

NR:

description
PREDICTED: proprotein convertase subtilisin/kexin type 6 isoform X1

GO: NA

KEGG:

id description
K08672 PCSK6; proprotein convertase subtilisin/kexin type 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007609 True 3660 mRNA 0.46 21 23845592 23886667

Neighbor

gene id symbol gene type direction distance location
AMCG00007610 snrpa1 coding downstream 10954 23831169 ~ 23834638 (-)
AMCG00007608 NA coding downstream 17877 23822491 ~ 23827715 (-)
AMCG00007607 chsy1,LOC106587790,LOC106562599 coding downstream 24117 23819042 ~ 23821475 (-)
AMCG00007611 chsy1,LOC107742304,LOC107755644,LOC107662251,LOC107691970,LOC107553812 coding downstream 64507 23772732 ~ 23781085 (-)
AMCG00007600 NA coding downstream 188161 23652533 ~ 23657431 (-)
AMCG00007615 spg21,LOC107594761,LOC107685233 coding upstream 75300 23961967 ~ 23966643 (-)
AMCG00007628 NA coding upstream 110261 23996928 ~ 23997392 (-)
AMCG00007623 NA coding upstream 118172 24004839 ~ 24011628 (-)
AMCG00007627 LOC106587701 coding upstream 130798 24017465 ~ 24021945 (-)
AMCG00007626 NA coding upstream 135886 24022553 ~ 24030570 (-)
G24955 NA non-coding downstream 132298 23713039 ~ 23713294 (-)
G24953 NA non-coding downstream 135497 23709508 ~ 23710095 (-)
G24943 NA non-coding downstream 175510 23667374 ~ 23670082 (-)
G24942 LOC107578340,LOC107755647,LOC107662256,LOC107742335 non-coding downstream 182052 23662892 ~ 23663540 (-)
G24905 NA non-coding downstream 408075 23423613 ~ 23437517 (-)
G25014 NA non-coding upstream 37572 23924239 ~ 23926237 (-)
G25019 NA non-coding upstream 67754 23954421 ~ 23955412 (-)
G25021 NA non-coding upstream 71313 23957980 ~ 23958182 (-)
G25024 NA non-coding upstream 71809 23958476 ~ 23960843 (-)
G25058 NA non-coding upstream 144368 24031035 ~ 24031304 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other downstream 425289 23406928 ~ 23420303 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other downstream 1269138 22561496 ~ 22576454 (-)
AMCG00007565 gatm other downstream 1487146 22340599 ~ 22358446 (-)
AMCG00007500 NA other downstream 3372673 20462504 ~ 20472919 (-)
G24217 NA other downstream 3513781 20331513 ~ 20331811 (-)
G25026 NA other upstream 85004 23971671 ~ 23972665 (-)
AMCG00007637 NA other upstream 376023 24262690 ~ 24281564 (-)
G25422 NA other upstream 1377665 25264332 ~ 25264951 (-)
AMCG00007684 shf,LOC108430988 other upstream 1744125 25630792 ~ 25631592 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other upstream 2167097 26053764 ~ 26070848 (-)

Expression


Co-expression Network