AMCG00007612


Basic Information

Item Value
gene id AMCG00007612
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23905203 ~ 23919949 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007612
ATGCCACATGCAGACATAGCGGACCTCAGCTCCTTCTTATTGATCATGGAAGATGGTGTGAAGGAGGAGACAGCACAGCCTAAAGCAGCTAAGCTTCCGGGGAAGGCTGGCTGGGTGAAGAAATCATCTGGAAAGATCCTGGGAACATACAAGGATCGTTACATTCATCTGGACAAGACAGTGATACTGGTCTATGAAAATGAGGAACTACAGAATGTCATAGAAAAAGTGGAGCTGGAAAACTACGATAAATGTCATGAATTACGGAGTCCATTTAAGAAGAATCGTTTGGTCTTAATCCGTGCCCCCAAGTCAAAGGTGCATGATGTGAAATTCCAGGCTCAAAGtccagaagagagagaagcttGGATCAAAGCCCTAAGCGATGGCATCAACAGAGCTAAAAATAAGGTCTTTGATGAGATCAAAGTTGATGAGAGTTGTTCTTTAGAACATGTCACACGCACAAGGCCAAAAGGGAATCAGGGACGAAGGCCACCCACCAGAGTGCATATGAAGGagGTTGCTAATGTTTCGTCAGATGGCAATTTAAGATTGGATCTTGATGCTGTTGACAACACTCCCAATGGAAACCACCCTGTTTTTACTGATATAGATGATACTAAAGAAGCTGTGAAGCCACCCATGCCACCTTGTAAACCAAGTGGCACCCTTCAGGAGACCTCTAATGGGGAACCCTCTCCTGAGAAGAAGGTCCTCAAGCCCCCAATGCCTCCTTCGAAAGTAAACAAACCCACTGTGCAAGCTGAGGAAGCAGAATCGAACGAGACCCCTGCTGCTGACGGCACTGCTGAACTTGTGGCCCCTCCGACACCTCCAACCAAACCTAACAACACTTCAGAAGACACTGCCAACAAACCAACCCCTCCTGCACCATCTCCTCCCAGCAAGGAGCTCAAACCACCAATGCCACCATCTAAGGACAAGAAACCCTCGGCTACAGCAAAGGAGGAGTATATAGAAGTTTCTCCAGAGGCTAAGGAGAAGGATGAGAAGAGCCCTgagggtgaggaacagccaaaggCCTCCATGCCAAGCGAAAAATCGGATGAAACTGTGGACAAACATATTGCTCCACCCTCTCCACCAAGTAAGGACCTTAAGCCCCCAGATATTAAGCCTGTTTCTCCAGCAACTGAGCCAGAGGAGTCAGCAGAAGCCCCTGCCACCCAGGAAGTACCCTCTCCTACTGAACCACAGGAACAGCCTAGCCCTATCCCCACCCAAGTGGAGACGAAGGACAGCCCTGCACCTGAGCTGAGCACAGAAATGCCCTCCCCTGAACCCATAGAGCCTTCTCCAGAGCCTCTGAAAAAGAGTCCTGGCCCTCCTGCTCTGAAAAAGAAGCCACTGATGCCCCCTGTTAAGGAAAAAGTCCAAGATCAACCACAAGATGTTGATATTCTcccagaaagaaaggaagatgtACCTTGTGAAGAGAATGTTTCTGCTTTCCAACAGAGTGTTCCAGAGGCTCAGACTCCACCTGAACCTAACCAAGATGTTCCTCTGTCTCACAAACCCAGCCAGGAGAACTTGGCTGCTCCATCTCCTAGCATTGTGATAAGCAGCCCTGATATTTCTGCTGAGCAAAGAGAACATGAAGGGGATAAGTTGAGTGATAGCGCCCAGAACAGTCACTCGGAGGATGAATCAGAAGTTGACAACATTAGAGCATCAACCACAGCGCTCAGTGGCAGCAGGGCGAACTTAGACATTGACATTGACGATGGGGGAGTCTCGGACATGCTTTTTCAGAATAAGGAAGAGGAGAAATCAAAGGACAGACCTCCCCTTCAGGACACAAATTCAATGGCTTTACACTGCATGAAGGCAGTCCCCCCTCCTGTGCCACTGAAAAGCACGTCAAAGGGGAAATTTGCCTCAATGGGAGATCTGTTGTCAGAGCCGACAGGGCCGACAGTGCAGAGGCAAGAAGAGACAATAAAGACACCTGATGTAAATTCCACAAGCAATTACATGGCCAAGCTCCATGGCAAAGTAACCTGGGAGCTGGAGAATACAGAAAAGCTTCTTCAGAAACTGTCCCAGGATGAGAATGAAACAGCCAAGGCAACGCAAGAAGCAACAGCAGACGGACAGTCAGACCTGTCTGCAGAGGAGATACTAAGCAAGGCAGTGGAAAAGCTCAAGAAAGCAGATGAGTTTTTGAAAGAAGTTCAGAGTCTTAAAGAATCTAATATCCCAAAACATAATTCCAGGAGAAAAAGCTGTTGACTACAGACAATACAAACAGCATAAATCAGTCTTTTCCTTGTTGATTGAccgtttttattttcttatatggCCCATCAAGTATGTGTCttg

Function

GO: NA

KEGG:

id description
K24022 PLEKHO; pleckstrin homology domain-containing family O

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007612 True 2349 mRNA 0.48 7 23905203 23919949

Neighbor

gene id symbol gene type direction distance location
AMCG00007606 lrrk1,LOC106593346,LOC106591281,LOC106562602,LOC106593412 coding upstream 145209 23713183 ~ 23759994 (+)
AMCG00007605 aldh1a3,LOC106562593 coding upstream 196431 23693242 ~ 23708772 (+)
AMCG00007593 NA coding upstream 473482 23422016 ~ 23431721 (+)
AMCG00007598 NA coding upstream 517363 23387661 ~ 23387840 (+)
AMCG00007589 mesdc2,LOC107591313 coding upstream 702434 23199152 ~ 23202769 (+)
AMCG00007614 NA coding downstream 22762 23942711 ~ 23960914 (+)
AMCG00007613 clpx,LOC107737000,LOC107594724 coding downstream 49892 23969841 ~ 23977600 (+)
AMCG00007617 NA coding downstream 59465 23979414 ~ 23985768 (+)
AMCG00007616 ubap1l,ubap1lb,LOC106562636,LOC106587705,LOC107685210 coding downstream 67797 23987746 ~ 23994665 (+)
AMCG00007619 NA coding downstream 77488 23997437 ~ 24007310 (+)
G24997 NA non-coding upstream 41410 23860682 ~ 23863793 (+)
G24992 pcsk6 non-coding upstream 53301 23845504 ~ 23851902 (+)
G24898 NA non-coding upstream 479763 23406984 ~ 23425440 (+)
G24897 NA non-coding upstream 498366 23405959 ~ 23406837 (+)
G24856 NA non-coding upstream 620188 23282688 ~ 23285015 (+)
G25011 NA non-coding downstream 1971 23921920 ~ 23923225 (+)
G25013 NA non-coding downstream 4290 23924239 ~ 23926154 (+)
G25056 NA non-coding downstream 111085 24031034 ~ 24031304 (+)
G25069 NA non-coding downstream 125040 24044989 ~ 24046609 (+)
G25084 NA non-coding downstream 165458 24085407 ~ 24087304 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 235124 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 711682 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 765682 23133811 ~ 23139521 (+)
G24606 NA other upstream 1622245 22281700 ~ 22282958 (+)
AMCG00007553 NA other upstream 1638794 22263520 ~ 22266409 (+)
AMCG00007631 NA other downstream 272272 24192221 ~ 24194481 (+)
AMCG00007640 NA other downstream 556538 24476487 ~ 24499650 (+)
G25822 NA other downstream 4163873 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 4518695 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 4762222 28682171 ~ 28700062 (+)

Expression


Co-expression Network