AMCG00007613 (clpx,LOC107737000,LOC107594724)


Basic Information

Item Value
gene id AMCG00007613
gene name clpx,LOC107737000,LOC107594724
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23969841 ~ 23977600 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007613
ATGTCCTGCACATGTACGTCTGCGGCGAGATTGCTCCTTAATTCAGCGCAAAAAGGAATCTCTTGCTCCAGGGTTCACCTCTATGCACTCGGTCGACCTGGCACACACAAGGTCCATTTCATAAGGAGACTGCCTGTCAGATCCTTTTCAGAGACTGCCGTGTACTTTGCTTCGAAAGACAGCACAACCAAAGATGGCTCTGGTGATGGTGGGAAGAAATCCGTTGGTGAAGGAGGTGGGAAACGGTCCACGGGCTCTGGAAACTCCGGAAAAGGAGGCAACCACCTGTGCTGTCCTAAGTGTGGGGACCCCTGCACTCATGTGGAAACATTTGTCTCTTCAACCCgctttgtgaaatgtgaaaaatgccATCACTTTTTTGTTGTGCTGTCAGAAACTGACTCAAAGAAGAGTATAAATAAAGAGCCAGAATCAGCTGCTGAAGCAGTAAAGCTGGCATTCCAACAGAAGCCCCCTCCTCCACCAAAAAAGATCTACGCCTATCTTGATAAGTATGTTGTTGGCCAATCCTATGCAAAGAAAGTGCTCTCAGTGGCTGTATACAATCACTACAAACGTATTTACAACAATATCCCAGCCAGCATGAGGCAGCAGGCAGAAGTGGAGAAACAAGCCTCCTTGACACCACGAGAGCTAGAAATACGAAGACGGGAGGATGAATACAGATTTACAAAGCTGCTGCAGATTGCTGGAATCAGTCCCCATGGCAATGCCCTGGGAGCCTCCATGCAGCAGCAAGTGAACCAGCAAGCCCCTcaggagaagagaggaggagaggtgCTGGACTCGAACAATGATGACATTAAACTGGAGAAAAGCAATATTCTACTGCTAGGTCCAACTGGATCAGGTAAAACTCTGTTGGCTCAAACGCTTGCGAAATGCCTGGATGTCCCCTTTGCGATCTGTGACTGTACTACATTGACCCAGGCCGGGTATGTGGGAGAAGACATCGAGTCTGTAATTGCCAAGCTGCTGCAGGATGCTAACTATGCAGTGGAGAAAGCACAACAAGGCATAGTATTTTTGGATGAAGTTGATAAGATTGGCAGTGTCCCGGGAATTCATCAGTTACGAGATGTGGGCGGGGAAGGTGTTCAGCAAGGTTTATTGAAGCTCCTGGAGGGTACCATTGTTAATGTTCCTGAAAAAAACTCCAGAAAACTGAGGGGAGAGACAATGCAAGTTGATACAACCAACATCCTGTTTGTGGCTTCTGGAGCCTTTAATGGACTTGACCGAATAATCAGCCGAAGGAAGAATGAAAAGTACCTGGGCTTCGGCACGCCATCCAACATGGGGAAGGGGCGCAGGGCGGCAGCGGCGGCAGACCTGGCCAACAGCAGCGGGGAGGGGGATGCAGTGCTGGAGATGGAGGAGAAGGACCGACTGCTCTGCCACGTGGAGGCCCGTGACCTCATCGAGTTTGGAATGATCCCGGAGTTCGTGGGCCGGCTGCCCGTGGTCGTGCCTCTGCACAGCCTAGACGAGGAGACACTGGTCCGCATTCTGACTGAGCCACGCAACGCTGTAGTGCCACAGTATCAAGCACTGTTTAGCATGGACAAATGTGAACTGAATGTCACTCCTGAAGCCTTGAGGGCCATAGCCAGACTGGCTTTGGATAGGAAGACCGGAGCTCGTGGCCTGAGATCAATTATGGAAAAATTGCTGCTGGAACCCATggCACCTGCTAAAGATTCTACTGAGGAGGAGTATGATTCCGGTGTTGAGGAAGAAAGCTGGCCGCGGCAGGCAGACGCAGCCaacaattaa

Function

symbol description
clpx Enables peptidase activator activity. Contributes to ATP-dependent peptidase activity. Involved in ATP metabolic process and proteolysis involved in cellular protein catabolic process. Located in cytosol; mitochondrial nucleoid; and nucleoplasm. Part of mitochondrial endopeptidase Clp complex. Implicated in erythropoietic protoporphyria.

NR:

description
PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial

GO: NA

KEGG:

id description
K03544 clpX, CLPX; ATP-dependent Clp protease ATP-binding subunit ClpX

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007613 True 1797 mRNA 0.51 14 23969841 23977600

Neighbor

gene id symbol gene type direction distance location
AMCG00007614 NA coding upstream 8927 23942711 ~ 23960914 (+)
AMCG00007612 NA coding upstream 49892 23905203 ~ 23919949 (+)
AMCG00007606 lrrk1,LOC106593346,LOC106591281,LOC106562602,LOC106593412 coding upstream 209847 23713183 ~ 23759994 (+)
AMCG00007605 aldh1a3,LOC106562593 coding upstream 261069 23693242 ~ 23708772 (+)
AMCG00007593 NA coding upstream 538120 23422016 ~ 23431721 (+)
AMCG00007617 NA coding downstream 1814 23979414 ~ 23985768 (+)
AMCG00007616 ubap1l,ubap1lb,LOC106562636,LOC106587705,LOC107685210 coding downstream 10146 23987746 ~ 23994665 (+)
AMCG00007619 NA coding downstream 19837 23997437 ~ 24007310 (+)
AMCG00007621 NA coding downstream 35730 24013330 ~ 24016613 (+)
AMCG00007620 hddc3,LOC107757611 coding downstream 64306 24041906 ~ 24044401 (+)
G25013 NA non-coding upstream 43687 23924239 ~ 23926154 (+)
G25011 NA non-coding upstream 46616 23921920 ~ 23923225 (+)
G24997 NA non-coding upstream 106048 23860682 ~ 23863793 (+)
G24992 pcsk6 non-coding upstream 117939 23845504 ~ 23851902 (+)
G24898 NA non-coding upstream 544401 23406984 ~ 23425440 (+)
G25056 NA non-coding downstream 53434 24031034 ~ 24031304 (+)
G25069 NA non-coding downstream 67389 24044989 ~ 24046609 (+)
G25084 NA non-coding downstream 107807 24085407 ~ 24087304 (+)
G25103 NA non-coding downstream 172743 24150343 ~ 24153848 (+)
G25134 NA non-coding downstream 234082 24211682 ~ 24213444 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 299762 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 776320 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 830320 23133811 ~ 23139521 (+)
G24606 NA other upstream 1686883 22281700 ~ 22282958 (+)
AMCG00007553 NA other upstream 1703432 22263520 ~ 22266409 (+)
AMCG00007631 NA other downstream 214621 24192221 ~ 24194481 (+)
AMCG00007640 NA other downstream 498887 24476487 ~ 24499650 (+)
G25822 NA other downstream 4106222 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 4461044 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 4704571 28682171 ~ 28700062 (+)

Expression


Co-expression Network