AMCG00007616 (ubap1l,ubap1lb,LOC106562636,LOC106587705,LOC107685210)


Basic Information

Item Value
gene id AMCG00007616
gene name ubap1l,ubap1lb,LOC106562636,LOC106587705,LOC107685210
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23987746 ~ 23994665 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007616
ATGAACAGTCTGGAAGAAGTACCATTCAAGATCCCGGCTGGGTGTCTGGATGAGTCCTTGCAGGAGGTGGAGTTGGTCTCCGCCCCCGAAGTCAATATCCCAGACTACCTCCAGATACTGCAGGAGACCCAGTATGAGTTCGGCATGGAGCACTGGGTCctgcaggggctgctgggaggGTATCAGAGGGAGAGCCAGGTGTGCAGCCCCTGCTCTTCGTCTGAGACTCAGCCCTCCTGCCCGCCCTACTGGCTGATGTTCAGCCGCCCGTCCGAGGCTGATCACAGGAGCAGCGAGGTGTGGGAGCCTGCCCCCCGGCATAGGAGCTACAGTCTGAATGCGGCCGACATCAGGTGTCTCCACCCCCGCGTGAAGTTCCTCATCTCAGACTCTGAGGAGGACGACGGCTACTCTGAGGACGACGAGCACTCATCCTCCGATGATGCAGAGTACCCCACCAAGGCCTTCACCTACAGCCCCGAGCCGCGCCGCAGCTTCCTCTTACGGAAGCAGTTCCCGGCGCTGAAAGACTTCCGCTCCGGCTCTTCCCCTCACTTCTTGAACTTGACGTCTCCCAGCAGCACCGCCAGACAGAGGAGGAATTCTCtaacctcctcctcctcctcctcttcctcctcctgccaCGACCTCAAGCTGTCTCCCTGCCTGGGGATGGACCGGCAGAGGATGGGCAGCCCCCAGTGCCAGGGTCAGAGACGCCTGAAGAGGAGGCTGCACCCCCTCTGCCAGCTCGGCCGAAACTACTCCCTCACCCCGCAGCCACCGTCATCGCCCCCCTCCGCACACCTCCAGCCCCGTCCCTCCACAGCTGGCCACATCCCCACCATCAAGAGCCACAAGCCCACGCTGGCGTCCCTGAGCCCTTACTCCTGCCTGCCACCCCCGCCTTCAGCGTCCCGACCCCTGAGTTCCCACAGATCCATGCCAGACTCCTCTGCGGAGCTGCTGTCAGCCCTCAGCCAGGAGGAGCAAGAGCTGCTGGAGGCCATCACCGACGAGGGTTATCCCCTGCGCCGAGCCATCTGGGCCCTGCAGAAGACCGGGAGGCAGAGTCCAGAGCAGATCCTCCGTTACCTGGTGGCCTGTGACCGACTGTGCAAGCGTGGCTATGACCAAGTACAGGTGGAGGAGGCCCTGGAGATGTTCCAGAACTGCGAGACAAAGGCTGCTGAATTCCTCCATCTGCTGGCTCAGTTCCACGAGATGGGCTTCCAGCAACACGCCATCAAGGAAGTGCTGCTCGTCCACGAGAACCACCGGGAGAAGGCGTTGGAGGAGCTCATGATGCGTGTCGAGTGA

Function

symbol description
ubap1lb Orthologous to human UBAP1L (ubiquitin associated protein 1 like).
ubap1l Predicted to enable ubiquitin binding activity. Predicted to be involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to be part of ESCRT I complex.

NR:

description
PREDICTED: ubiquitin-associated protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007616 True 1320 mRNA 0.62 5 23987746 23994665

Neighbor

gene id symbol gene type direction distance location
AMCG00007617 NA coding upstream 1978 23979414 ~ 23985768 (+)
AMCG00007613 clpx,LOC107737000,LOC107594724 coding upstream 10146 23969841 ~ 23977600 (+)
AMCG00007614 NA coding upstream 26832 23942711 ~ 23960914 (+)
AMCG00007612 NA coding upstream 67797 23905203 ~ 23919949 (+)
AMCG00007606 lrrk1,LOC106593346,LOC106591281,LOC106562602,LOC106593412 coding upstream 227752 23713183 ~ 23759994 (+)
AMCG00007619 NA coding downstream 2772 23997437 ~ 24007310 (+)
AMCG00007621 NA coding downstream 18665 24013330 ~ 24016613 (+)
AMCG00007620 hddc3,LOC107757611 coding downstream 47241 24041906 ~ 24044401 (+)
AMCG00007618 mfap1 coding downstream 53569 24048234 ~ 24051827 (+)
AMCG00007622 serinc4 coding downstream 61531 24056196 ~ 24077348 (+)
G25013 NA non-coding upstream 61592 23924239 ~ 23926154 (+)
G25011 NA non-coding upstream 64521 23921920 ~ 23923225 (+)
G24997 NA non-coding upstream 123953 23860682 ~ 23863793 (+)
G24992 pcsk6 non-coding upstream 135844 23845504 ~ 23851902 (+)
G24898 NA non-coding upstream 562306 23406984 ~ 23425440 (+)
G25056 NA non-coding downstream 36369 24031034 ~ 24031304 (+)
G25069 NA non-coding downstream 50324 24044989 ~ 24046609 (+)
G25084 NA non-coding downstream 90742 24085407 ~ 24087304 (+)
G25103 NA non-coding downstream 155678 24150343 ~ 24153848 (+)
G25134 NA non-coding downstream 217017 24211682 ~ 24213444 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 317667 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 794225 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 848225 23133811 ~ 23139521 (+)
G24606 NA other upstream 1704788 22281700 ~ 22282958 (+)
AMCG00007553 NA other upstream 1721337 22263520 ~ 22266409 (+)
AMCG00007631 NA other downstream 197556 24192221 ~ 24194481 (+)
AMCG00007640 NA other downstream 481822 24476487 ~ 24499650 (+)
G25822 NA other downstream 4089157 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 4443979 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 4687506 28682171 ~ 28700062 (+)

Expression


Co-expression Network