AMCG00007618 (mfap1)


Basic Information

Item Value
gene id AMCG00007618
gene name mfap1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24048234 ~ 24051827 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007618
ATGGCGGCACCAAACTCTCTCAACATGAAGCAGCCGCCGATCCAGTCCACGGCCGGGGCTGTGCCGGTCCGCAATGAAAAAGGCGAGATCTCCATGGAGAAGGTGAAGGTGAAACGCTATGTGTCGGGGAAGCGGCCGGACTACGCCCCCATGGAGTCCTCAgacgaggaggatgaggatttCCAGTTCATGAAGAAGGGCAAGGAGGCCGAGCCTGAGGTGGAACTGGAGGAGGAGGACCTGTCAGACCCCCGACTACGGCGCTTGCTGAACCGCGTGAGCGAGGATGTGGAGGAGAGGCTGGCGAGGCACAGGCAGATTGCAGAGCCAgaggtggtggtggagagcagcGAGGAGTCGGACGATGAGGGCTGGCATCCAGACCGAGAGGAGAGcagtgaggaggaagaggaggaggaggtcgATGATGAGGAAATCGAGAGGCGGCGAGCCATGATGCGCCAGCGAGCACAGGAGCGCAAGACAGAGGACATGGAGCTgatggaggtggaggaggagggcaaATCGGGAGAGGAGTCTGAGTCTGAGTCGGAGTACGAGGAATACACAGACAGCGAGGACGAGGCTGAGCCGCGCCTCAAACCTGTCTTCATCCGCAAGAAGGATCGCGTGACGGTGGCCGAGCGCGAGGCGGAGGAGCTGAAGCAGAAGGAGTTGGAGGTCGAGGCTAAGAAGCAGGTGGAGGAGCGGCGGCGCTACACCCTGAAGATCGTGGAGGAGGAGGCCAAGAAGGAGTTTGAGGAGAACCGGCGCACACTGGCCGCACTCGATGCCCTCGACACGGACGGAGAGAACGAGGAGGAGGAGTACGAGGCCTGGAAGGTCCGGGAGCTCAAGCGCATCAAGCGAGATCGCGAGGCCCGGGAAGCCTTGGAGAAGGAGAAGGCGGAGATCGATCGCTTCCACAATCTCACAGAGGAAGAGCGCAGAGCTGAGCTGCGGTCCAACGGCAAAGTTGTCACCAACAAGGCCTCCAAGGGCAAATACAAATTCCTGCAGAAATACTACCATAGAGGGGCCTTCTTCATGGATGAGGAGCAGGATGTGTTCAAGAGAGATTTCAGCGCCCCCACTCTGGAGGACCACTTCAACAAGACCATCCTCCCCAAAGTTATGCAGgTCAAAAACTTTGGACGGTCTGGGCGCACTAAATACACACACTTGGTGGATCAGGATACCACTTCCTTTGACTCGGCCTGGGCTCAGGAGAGTGCTCAGAATAGCAAGTTCTTCAAGCAGAAGGCTGGGGGTGTGCGAGATGTGTTTGACAGGCCCTGTGTTAAAAAGAGGAAGACCTGA

Function

symbol description
mfap1 Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of U2-type spliceosomal complex. Orthologous to human MFAP1 (microfibril associated protein 1).

NR:

description
PREDICTED: microfibrillar-associated protein 1

GO: NA

KEGG:

id description
K13110 MFAP1; microfibrillar-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007618 True 1320 mRNA 0.58 8 24048234 24051827

Neighbor

gene id symbol gene type direction distance location
AMCG00007620 hddc3,LOC107757611 coding upstream 3833 24041906 ~ 24044401 (+)
AMCG00007621 NA coding upstream 31621 24013330 ~ 24016613 (+)
AMCG00007619 NA coding upstream 40924 23997437 ~ 24007310 (+)
AMCG00007616 ubap1l,ubap1lb,LOC106562636,LOC106587705,LOC107685210 coding upstream 53569 23987746 ~ 23994665 (+)
AMCG00007617 NA coding upstream 62466 23979414 ~ 23985768 (+)
AMCG00007622 serinc4 coding downstream 4369 24056196 ~ 24077348 (+)
AMCG00007633 LOC106526729,LOC108249217,LOC107091076,LOC102219664 coding downstream 177695 24229522 ~ 24230585 (+)
AMCG00007632 tubgcp4,LOC107695351 coding downstream 204319 24256146 ~ 24261899 (+)
AMCG00007636 map1a,LOC106584644 coding downstream 284734 24336561 ~ 24349947 (+)
AMCG00007638 NA coding downstream 397495 24449322 ~ 24461405 (+)
G25069 NA non-coding upstream 1625 24044989 ~ 24046609 (+)
G25056 NA non-coding upstream 16930 24031034 ~ 24031304 (+)
G25013 NA non-coding upstream 122080 23924239 ~ 23926154 (+)
G25011 NA non-coding upstream 125009 23921920 ~ 23923225 (+)
G24997 NA non-coding upstream 184441 23860682 ~ 23863793 (+)
G25084 NA non-coding downstream 33580 24085407 ~ 24087304 (+)
G25103 NA non-coding downstream 98516 24150343 ~ 24153848 (+)
G25134 NA non-coding downstream 159855 24211682 ~ 24213444 (+)
G25138 NA non-coding downstream 176809 24228636 ~ 24228910 (+)
G25148 cdkn2aip,LOC107757748,LOC107695352,LOC107730231,LOC107596431,LOC107701282 non-coding downstream 202963 24254790 ~ 24255913 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 378155 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 854713 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 908713 23133811 ~ 23139521 (+)
G24606 NA other upstream 1765276 22281700 ~ 22282958 (+)
AMCG00007553 NA other upstream 1781825 22263520 ~ 22266409 (+)
AMCG00007631 NA other downstream 140394 24192221 ~ 24194481 (+)
AMCG00007640 NA other downstream 424660 24476487 ~ 24499650 (+)
G25822 NA other downstream 4031995 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 4386817 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 4630344 28682171 ~ 28700062 (+)

Expression


Co-expression Network