AMCG00007619


Basic Information

Item Value
gene id AMCG00007619
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 23997437 ~ 24007310 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007619
ATGCGGGGCTTGCAGCCGGCCGAGGGAGGCGAGAGACGGAGCATGTCCTCAATGTTTGGAAAAGCAAGAACCTGTAATGTGGTTAATGTTTGCACTGTTGCGGACCGGGGTCAACCTGAGTGCAATATCGCTATATTGGGCATTACAGGGTCAGGAAAGTcggCCCTCACAGTGAAGTTTCTCACTAAGCGCTTCATCAGTGAATACGACCCCAATCTTGAAGATACTTACACTTCTGAAGAAATTGTGGACCAACAGCCCGTTCTGGTGAAAGTCATGGATACAGCCGATCAGaaagagaaaaacaataaacaacagtCAAAGCCAAACATTGACAACCGCAGGAGCTTCGAGGGCTGTCAGCAGTACCTGGACACTGTGAGTCTGCACGGCAAGGGGCTGCAGCCAGAGACGCCCACCATCCTGCTGGGCAACAAACTGGACATGGAGAGATACAGACAAGTGAGCAAGTCTGATGGCGTGTCCCTGGCATCACGCTACAGCTGTATGTTCTTTGAGGTGTCGGCCTGCATGGACTTCCCCTCGGTGCAGCGCGTGTTCCATGAGGCGGTGAGGGAGGCGCGACGCGAAGCGGAGAGGAGCCTGCCCGTGCGGCCGCTCTTCATCAGCGAGGAGAAATCCCTGCTCAGCCTGGCCTCCGCCCCGCCCATCGCCCCTGGATACAAGGAGCTGCCCTCCCTCGCCACTGCCAAGGTGGTCACCGTCAAGTCCTCCCGTGCCCAAAGCAAGCGCCGCGCCCCCACGCTGACCCTGCTCAAGGGCTTCAAAATCTTctaaccccaccccaccccacccaacCTCACTCCCCTCCCGGGCTGCTTTCATCTAAAGTGGACCGCATCCACAACTGCCTTCCATTACCAGGGGAGCTGGTCGCTCACTTTGCTTGAGCATGGTGCTGATAACTCCAGTTTGATCCTCATTTGGATTGGTGCCCAGTCCTGTTCTCTTCCTTGGTTGCTGAAACCCTGGCATCGATGCATCGCTTTATGAGGTCATATTTGCATGTGCCTTAACAGCTATGAAAGTGCCTTCACTCAGCCACGTGGGGGCTGCAGCAGCACAACTCTCTTTATATACTGTGACGTGGAAGAGAATGGCGTGCCACACAGAAGTAGATCATTGATACTCCAGTCACATACACACCCGGCTAAGCTACGCAAGCCCTGAACACAGTGGGATGCTTTTAAATTGCTTCTTTTAATTGTCATAGGAACATACTATGCCTTATATTCCATCGCATAAGCCCTGGATTGAAATTTCAAGGTGACAAGAGGAATGCTCTTCATCCAGTTCCCTTACGGACACAGCAAAATCACTACAGAGTCTGGACGAATGGGCATCAATGCAGACTGGAGTCCCCTCTTGCCCCGTAAGCACAGGGGACAGTAATGGGGACAGCACGGGGACTACAGGTGGAGAAGACTCTGTGGAGGTCTGGATCACTGACAGCAGTACTTAAACTGAATGAAGTTCACACCACAGATGTAAAGAGGAGAGGGGGGAGATGTTGTTGGGAtttggggatttttattttttggtaagaATGAGCCTACCAATAAGAACAGTGTGAGATCCTCTGGGTTAAAGAATCAGGCTGGCCAGACTAGTTGTCGCTGGTAAGTGGCCATGCCTCCATTGATTCAACAAGACTACTGATCTGATCTAAATGCAAACAATTGGGTTTTTACATACAGTCTTGTGAGGGGCTGCATTATGTTAAATGGACTCTCTGCTCAAAGAGCCTGTCTAAAATGATGGTTACAGGGAcaagattacattttcagttgtcTGACTAATTGAACAACACGTGACTCCCCTCTAGAGTCTGACTGGTGTAAGTGCAGGGTTTTAGTGAGTGTATTAATAGGCTAGGTTGAGGAAGGGGATTGGGTTAGGGTAGTGAAGATTGGGTTCGATTTGCTTTGGTCTAGTGTAAGGGTTAGGTCCATGGATCCTATAGTAAAAGGTGAAAGGCATGCTGACACTTCAGAAGTAGACAGCAAAGGTCAGAATTAATGTTAAGGTTAAGTTATGTGCTAGCTATTGATAAGAGTGTAAATGTGATTAAACCCAGCTACTTTGACAGGTAGTTTTTATAAACCTAGACACCAAAAGTCAGATGACAGTACATGTATCCCAGTGAAACATTTTCTACAATACAACAACAACCTTGTTAGTTTTATGCAGAGGGAATACAAGCATACGTATGATTGTCATGATAGACTGTTTTATGATCCCTGAAATGACTGAGACACAGTTAAAAACACGTACCGTAAGGCATGTACCATACAGAACTGCTTAAAGCAGATGAGTAAAAAATAAACGAGTCAAAGTAGGAGAGCAGTTTTCTATATGTGTAAAAAATTCTTACACAGAacaagttttaaattaaaagctttgcAGTGAGATGTTAAGCCACTGTGTCCGTTTGTGATTATGATACCTTGTTTGCTTCTTGTAATAAATCTCAGTGTGGCCAAGCACAGATGTGAAGCCATTGGCTTGGTGGTCCTCTTATCTCCAGCTCTTTGATTTTCTCATGTCCACTCCTGATGGATTACAATAAATCTGGAGTGTGTGGTCAGATACTTTCAACACTGTGGGAATGTATGCAGAGGTAAACCCAGCATTCCTGGGGCAGAGAATGAGAAATGCAATCCACCACCTCCACTAGCCTGCGTGTATGAAAACCTCACCCATGTACTGTATGACTGTACCCCTGAATACACATAGAGTCTGTAGGGCATAACAAAAGACATGTATATAAACAGGACAAGATCAACAGGGGTAGATTGCTTTCGATATTTCACTCAAGTACAGTATGCAGTAGTTACTTCAAACTACAAAGCAACGGCACCCATACCAGCATTTGAATATGAAAGtgttggaaatatataatttgtttcttaattgtatcttttgtattgtcttttatatattttttttctcgaAAAGGTGAATAAATTTAAATTCAGAAATGTCCTACTGGTGGGCTGTTGTTGTCATGTGATGATGTCATGTGTCTGCCCCATCCCGTGTGATGAAGAAGCGGGACATCCTGTCCAGCAGCCAATGCACAGGGAAAATAGGGAAAGTGTAGGGAGAGGGTAGTACAAATCAGCAGAACCTGATGTTAAGTAAAACAGAGGTGGGGAAAAGAGTAGGTGGCACTTTTCTTGGATATTGCTATAAGTGTGGATGGTACATGCTGGAGGTTGAGACTCTTGAGTGCTGATGAAACTGCACTGTCACATGGGATGTAAAAGAATCATCATCAGTgagttgtctctctctctctctctctct

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07854 RASL12, RIS; Ras-like protein family member 12

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007619 True 3330 mRNA 0.46 7 23997437 24007310

Neighbor

gene id symbol gene type direction distance location
AMCG00007616 ubap1l,ubap1lb,LOC106562636,LOC106587705,LOC107685210 coding upstream 2772 23987746 ~ 23994665 (+)
AMCG00007617 NA coding upstream 11669 23979414 ~ 23985768 (+)
AMCG00007613 clpx,LOC107737000,LOC107594724 coding upstream 19837 23969841 ~ 23977600 (+)
AMCG00007614 NA coding upstream 36523 23942711 ~ 23960914 (+)
AMCG00007612 NA coding upstream 77488 23905203 ~ 23919949 (+)
AMCG00007621 NA coding downstream 6020 24013330 ~ 24016613 (+)
AMCG00007620 hddc3,LOC107757611 coding downstream 34596 24041906 ~ 24044401 (+)
AMCG00007618 mfap1 coding downstream 40924 24048234 ~ 24051827 (+)
AMCG00007622 serinc4 coding downstream 48886 24056196 ~ 24077348 (+)
AMCG00007633 LOC106526729,LOC108249217,LOC107091076,LOC102219664 coding downstream 222212 24229522 ~ 24230585 (+)
G25013 NA non-coding upstream 71283 23924239 ~ 23926154 (+)
G25011 NA non-coding upstream 74212 23921920 ~ 23923225 (+)
G24997 NA non-coding upstream 133644 23860682 ~ 23863793 (+)
G24992 pcsk6 non-coding upstream 145535 23845504 ~ 23851902 (+)
G24898 NA non-coding upstream 571997 23406984 ~ 23425440 (+)
G25056 NA non-coding downstream 23724 24031034 ~ 24031304 (+)
G25069 NA non-coding downstream 37679 24044989 ~ 24046609 (+)
G25084 NA non-coding downstream 78097 24085407 ~ 24087304 (+)
G25103 NA non-coding downstream 143033 24150343 ~ 24153848 (+)
G25134 NA non-coding downstream 204372 24211682 ~ 24213444 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 327358 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 803916 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 857916 23133811 ~ 23139521 (+)
G24606 NA other upstream 1714479 22281700 ~ 22282958 (+)
AMCG00007553 NA other upstream 1731028 22263520 ~ 22266409 (+)
AMCG00007631 NA other downstream 184911 24192221 ~ 24194481 (+)
AMCG00007640 NA other downstream 469177 24476487 ~ 24499650 (+)
G25822 NA other downstream 4076512 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 4431334 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 4674861 28682171 ~ 28700062 (+)

Expression


Co-expression Network