AMCG00007620 (hddc3,LOC107757611)


Basic Information

Item Value
gene id AMCG00007620
gene name hddc3,LOC107757611
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24041906 ~ 24044401 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007620
ATGAATTTCGAATCGGCTTTGCTATTGGAAACAGTGAACTTTGcagcagagaaacacaaaaatcaacGGCGTAAGGACCCCGAAGCCACTCCTTACATCAACCACCCTATCGGGGTGGCCAGAATTTTGAGTCATGAATGTGGAATTACAGACATCGCAGTTTTACAGGCAGCTCTGCTCCATGACACAGTGGAAGACACTGACACCACGCTGGGGGAGCTGGAGGGAGTTTTCGGGGGGACGGTAGCACGGATCGTCCAGGAGGTGACGGATGACAAGTCCCTGCCCAAGCAGGAGAGGAAGCGGCTGCAAGTAATGCACGCTCCCCACTGCAGCTACCAGGCCAAGCTGGTCAAACTGGCAGACAAACTGTACAACTTGAGGGACCTCAACCGCACCACCCCCACTGGCTGGACACCAGAGCGAGTACAGGAGTACTTTCTGTGGGCTGCGGAAGTGGTGAGGGGACTGCGGGGCACCAACGCCATACTGGAGGAAAGACTGCAGCAGCTATTCAGGGAGAGAGGCATCGAGACCTGA

Function

symbol description
hddc3 Predicted to enable guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity. Is expressed in several structures, including EVL; mucus secreting cell; periderm; sensory system; and swim bladder. Orthologous to human HDDC3 (HD domain containing 3).

NR:

description
PREDICTED: guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG:

id description
K21138 HDDC3; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007620 True 540 mRNA 0.55 4 24041906 24044401

Neighbor

gene id symbol gene type direction distance location
AMCG00007621 NA coding upstream 25293 24013330 ~ 24016613 (+)
AMCG00007619 NA coding upstream 34596 23997437 ~ 24007310 (+)
AMCG00007616 ubap1l,ubap1lb,LOC106562636,LOC106587705,LOC107685210 coding upstream 47241 23987746 ~ 23994665 (+)
AMCG00007617 NA coding upstream 56138 23979414 ~ 23985768 (+)
AMCG00007613 clpx,LOC107737000,LOC107594724 coding upstream 64306 23969841 ~ 23977600 (+)
AMCG00007618 mfap1 coding downstream 3833 24048234 ~ 24051827 (+)
AMCG00007622 serinc4 coding downstream 11795 24056196 ~ 24077348 (+)
AMCG00007633 LOC106526729,LOC108249217,LOC107091076,LOC102219664 coding downstream 185121 24229522 ~ 24230585 (+)
AMCG00007632 tubgcp4,LOC107695351 coding downstream 211745 24256146 ~ 24261899 (+)
AMCG00007636 map1a,LOC106584644 coding downstream 292160 24336561 ~ 24349947 (+)
G25056 NA non-coding upstream 10602 24031034 ~ 24031304 (+)
G25013 NA non-coding upstream 115752 23924239 ~ 23926154 (+)
G25011 NA non-coding upstream 118681 23921920 ~ 23923225 (+)
G24997 NA non-coding upstream 178113 23860682 ~ 23863793 (+)
G24992 pcsk6 non-coding upstream 190004 23845504 ~ 23851902 (+)
G25069 NA non-coding downstream 588 24044989 ~ 24046609 (+)
G25084 NA non-coding downstream 41006 24085407 ~ 24087304 (+)
G25103 NA non-coding downstream 105942 24150343 ~ 24153848 (+)
G25134 NA non-coding downstream 167281 24211682 ~ 24213444 (+)
G25138 NA non-coding downstream 184235 24228636 ~ 24228910 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 371827 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 848385 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 902385 23133811 ~ 23139521 (+)
G24606 NA other upstream 1758948 22281700 ~ 22282958 (+)
AMCG00007553 NA other upstream 1775497 22263520 ~ 22266409 (+)
AMCG00007631 NA other downstream 147820 24192221 ~ 24194481 (+)
AMCG00007640 NA other downstream 432086 24476487 ~ 24499650 (+)
G25822 NA other downstream 4039421 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 4394243 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 4637770 28682171 ~ 28700062 (+)

Expression


Co-expression Network