AMCG00007621


Basic Information

Item Value
gene id AMCG00007621
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24013330 ~ 24016613 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007621
ATGTGGAACAATTTTAAGCTGGTCGTGTCAAGGAGGGTCGTTACCAGCGTTTGCTATAGCATGGTCTTTGAAAATAACGTTTGTGGACATTACCACATTTCCACAGCAGGGCTATGGGGTTGGAGGACTTTCTCCCATAGCCCAGAAAAGGCGCACGTCAGCCCGCAGGCCCGTCCCCGCAGCGTGCGGTCAGCCCCGCCATGGAGAGTGATGTTCTTCGGGACGGACGAGTTTGCGCTGCAGTCTTTGAAACTCCTAGCCGAGTCCAGCAAACACAATTCCTCAGAGAGGGTAGTGGACAAGCTTGAAGTGGTCACTTTACTGAAGGAGCTGCCAGTGAGGACTTTTGCCAACCAGAATAAACTTCCTGTCCATGACTGGCCTCACGTGGACCCCGGTGAGCAGTTCGATGTGGGTGTGGTGGTGTCTTTCGGCAGCCTGCTCCGAGAGGATCTCATCCGAAGGTTTCCATATGGGATCCTGAACGTCCACCCCAGCCTGCTGCCCAGGTGGAGGGGCCCGGCCCCCGTCTTCCACACCGTGCTCAATGCAGACACTGTCACTGGGGTCACTGTCATGCAGATCAGACCCAAGAGGTTTGACGTGGGTCCAGTGCTCAGTCAGGAGCTGTTCCCAGTTCCAAAAAACTGCACAGCTGAGCAGCTTGGAGCCTCCCTGGCCACTATGGGAGCTGAGATGTTAATACACACTCTGAAGAACCTACCAGAAAGAATAGCAAACAGGAGAGAACAATCGAAGGAAGGAGCAACCTTTGCTCCAAAAATAAGCACCACAATGAGCTGGATTGACTGGGAGGAGACCTGTGCCCAGATTGGGTGTCTCTTTAGAGCTATTGGATCTCGAATCTCCCTACGGACCATGTGGATGGGACAGATGATAAAGCTGTTAGATTTTGTTGAAGAGTCAAACATTCCAGTTTCAGcacagggaagaaacccagctcCAGGGACTATGCAGTACCAGAAGGAGTCAAACACTCTGCTTGTGCGTTGTAAGgATGGCTGGGTGGGGTTCAAAGCTGTGAAATTGAAGAAAAGACTCTCTGCAGCAGACTTCTACAATGGCTATCTTCACCAGTATTTTATAAGCAAATCCTCCACACAGCCAAAC

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0071951 conversion of methionyl-tRNA to N-formyl-methionyl-tRNA biological_process
GO:0004479 methionyl-tRNA formyltransferase activity molecular_function

KEGG:

id description
K00604 MTFMT, fmt; methionyl-tRNA formyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007621 True 1131 mRNA 0.52 9 24013330 24016613

Neighbor

gene id symbol gene type direction distance location
AMCG00007619 NA coding upstream 6020 23997437 ~ 24007310 (+)
AMCG00007616 ubap1l,ubap1lb,LOC106562636,LOC106587705,LOC107685210 coding upstream 18665 23987746 ~ 23994665 (+)
AMCG00007617 NA coding upstream 27562 23979414 ~ 23985768 (+)
AMCG00007613 clpx,LOC107737000,LOC107594724 coding upstream 35730 23969841 ~ 23977600 (+)
AMCG00007614 NA coding upstream 52416 23942711 ~ 23960914 (+)
AMCG00007620 hddc3,LOC107757611 coding downstream 25293 24041906 ~ 24044401 (+)
AMCG00007618 mfap1 coding downstream 31621 24048234 ~ 24051827 (+)
AMCG00007622 serinc4 coding downstream 39583 24056196 ~ 24077348 (+)
AMCG00007633 LOC106526729,LOC108249217,LOC107091076,LOC102219664 coding downstream 212909 24229522 ~ 24230585 (+)
AMCG00007632 tubgcp4,LOC107695351 coding downstream 239533 24256146 ~ 24261899 (+)
G25013 NA non-coding upstream 87176 23924239 ~ 23926154 (+)
G25011 NA non-coding upstream 90105 23921920 ~ 23923225 (+)
G24997 NA non-coding upstream 149537 23860682 ~ 23863793 (+)
G24992 pcsk6 non-coding upstream 161428 23845504 ~ 23851902 (+)
G24898 NA non-coding upstream 587890 23406984 ~ 23425440 (+)
G25056 NA non-coding downstream 14421 24031034 ~ 24031304 (+)
G25069 NA non-coding downstream 28376 24044989 ~ 24046609 (+)
G25084 NA non-coding downstream 68794 24085407 ~ 24087304 (+)
G25103 NA non-coding downstream 133730 24150343 ~ 24153848 (+)
G25134 NA non-coding downstream 195069 24211682 ~ 24213444 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 343251 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 819809 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 873809 23133811 ~ 23139521 (+)
G24606 NA other upstream 1730372 22281700 ~ 22282958 (+)
AMCG00007553 NA other upstream 1746921 22263520 ~ 22266409 (+)
AMCG00007631 NA other downstream 175608 24192221 ~ 24194481 (+)
AMCG00007640 NA other downstream 459874 24476487 ~ 24499650 (+)
G25822 NA other downstream 4067209 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 4422031 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 4665558 28682171 ~ 28700062 (+)

Expression


Co-expression Network