AMCG00007622 (serinc4)


Basic Information

Item Value
gene id AMCG00007622
gene name serinc4
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24056196 ~ 24077348 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007622
ATGATTGACCCCCAGGTGCCTAAGGACCTTGGAGCTTTCACCCATTTTGCCCAGATCCCAGTCTATGGAGTGATGTTGAATCATTGTGTCCGGGCTCAGCAACAATCCAGGATGTCGGCAGGCCGGGCTCTGCGTCGCAGCAGTGTCTGCCGCTATTTTGTCAACGCTGTGGCCTATCAGGTATGTTGTTGCTGTGGCCCTGCTCCGTGCTCCCTGTGCTGTGCCTGCTGCCCATCCATCAAATCGTCCTCCAGCACACGGCTAATGTACACGTTGTTCCACATCCTGGCTTGCGTGGTGTCTTGCCTCATGCTGTCTAGGACCGTCTCGGAGGCCGTGCGAGAGAATGTGCCTTTTTACACCCTGATCTGTGACCATGtccaggggggtggagactgtGAGATGCTGGTGGGGTACTCAGCAGTGTACAGGGTGTGTTTCGGCACCGCCTGCTTCTACCTGATGCTAGCGCTCTTCCTCATCAATGTCCGGTCCAGCCAGGACTACCGTGCTCTCATCCACAACGGgttcTGGTTTCTGAAGCTGGTCACCCTGATTGGGATGTGCGCAGCTGCCTTCTTTATCCCCACTGAGTCTTTCCTGCATGCCTGGCACTATGTTGGCGTGGTGGGGGGGTTTGCCTTCATCCTAATCCAGTTGGTCCTCATCACTGCCTTCGCTCACACCTGGAACAAGAACTGgttGACAGGAGCTGCTGAAGACAAGCGCTGGTACCTGGCCGTGCTGTGTGCCACCATGGTCTTCTACACCATCGCGTCGTCAGCCTTCACCTTCATGTATAAATACTACACCCACCCTGCTGCTTGCCAGCTCAACAAGGTCCTGCTGTGGACCAACCTGGGGCTGTGTGGCCTCATGTCCTTCATGGCCATCACACCCTGCGTCCAGCTCAAGCAGCCACGCTCAGGACTGCTGCAGGCCTCCATCATCAGCTGCTACGTGATGTACCTGACTTTCTCTGCATTGTCTAGCCGCCCCCCCGAGAGAGtGGAGTACGAGGGCCGCAACATGAGTGTGTGCTTCCCCAGTGTGAGCCGGGACGGCATGCAGACTGAGGACAACGCTGTGGCCATCATCGGGGCTGCTATAATGTACGGCTGTGTCCTCTTCGCATGCAATGAAGCCTCCTACCTGGCGGAGATGTTCGGCCCCTTCTGGATGATTAAAGTCTACAGATACGAGTTCCAGAAAGCCAGCTGCTGTTTCTGTTGcccagaggaggaagaggATCAATCAGTTGAGGTGGATGATGACACTAAAGGGGGTCAGAAGGTGATCCACAATGAAGCCCAGCGGGTGGTCTACAGCTACTTCTTCTTCCACTTTGTCTTCTTCCTGGCCTCCCTGTACGTCATGATGACCCTCACCAACTGGTTCAGCTACGAGTCGGCCATCCTGGAGACCACCTTCACCCACGGGAGCTGGTCCACCTTCTGGGTGAAGATGTCCTCGTGCTGGGCCTGTGTGGTCCTGTACATGTGGATCCTGCTGGCCCCACTGTGCCGCCGGGAGCCCACATTGCGGCCCAAGCGCTCCCGCATTAAGCGACGCGCCACCCTACAGCCCAATGGCAGCGTGTGA

Function

symbol description
serinc4 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SERINC4 (serine incorporator 4).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: serine incorporator 4

GO: NA

KEGG:

id description
K24177 SERINC4_5; serine incorporator 4/5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007622 True 1602 mRNA 0.57 13 24056196 24077348

Neighbor

gene id symbol gene type direction distance location
AMCG00007618 mfap1 coding upstream 4369 24048234 ~ 24051827 (+)
AMCG00007620 hddc3,LOC107757611 coding upstream 11795 24041906 ~ 24044401 (+)
AMCG00007621 NA coding upstream 39583 24013330 ~ 24016613 (+)
AMCG00007619 NA coding upstream 48886 23997437 ~ 24007310 (+)
AMCG00007616 ubap1l,ubap1lb,LOC106562636,LOC106587705,LOC107685210 coding upstream 61531 23987746 ~ 23994665 (+)
AMCG00007633 LOC106526729,LOC108249217,LOC107091076,LOC102219664 coding downstream 152174 24229522 ~ 24230585 (+)
AMCG00007632 tubgcp4,LOC107695351 coding downstream 178798 24256146 ~ 24261899 (+)
AMCG00007636 map1a,LOC106584644 coding downstream 259213 24336561 ~ 24349947 (+)
AMCG00007638 NA coding downstream 371974 24449322 ~ 24461405 (+)
AMCG00007641 LOC107733946,LOC107685211,LOC108428500,LOC107737001,LOC103353203,LOC107662289 coding downstream 445117 24522465 ~ 24536808 (+)
G25069 NA non-coding upstream 9587 24044989 ~ 24046609 (+)
G25056 NA non-coding upstream 24892 24031034 ~ 24031304 (+)
G25013 NA non-coding upstream 130042 23924239 ~ 23926154 (+)
G25011 NA non-coding upstream 132971 23921920 ~ 23923225 (+)
G24997 NA non-coding upstream 192403 23860682 ~ 23863793 (+)
G25084 NA non-coding downstream 8059 24085407 ~ 24087304 (+)
G25103 NA non-coding downstream 72995 24150343 ~ 24153848 (+)
G25134 NA non-coding downstream 134334 24211682 ~ 24213444 (+)
G25138 NA non-coding downstream 151288 24228636 ~ 24228910 (+)
G25148 cdkn2aip,LOC107757748,LOC107695352,LOC107730231,LOC107596431,LOC107701282 non-coding downstream 177442 24254790 ~ 24255913 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 386117 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 862675 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 916675 23133811 ~ 23139521 (+)
G24606 NA other upstream 1773238 22281700 ~ 22282958 (+)
AMCG00007553 NA other upstream 1789787 22263520 ~ 22266409 (+)
AMCG00007631 NA other downstream 114873 24192221 ~ 24194481 (+)
AMCG00007640 NA other downstream 399139 24476487 ~ 24499650 (+)
G25822 NA other downstream 4006474 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 4361296 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 4604823 28682171 ~ 28700062 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location