AMCG00007624 (vps33b)


Basic Information

Item Value
gene id AMCG00007624
gene name vps33b
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24032553 ~ 24045372 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007624
CCCATCCCAGCTTCTCGGGCTTTGAGTGAAAACCTGCTACTGTACTTTGAAAGTATCCAGAATTACAAAACTAATATTAGCTAAACTTCACCCCAAAAAAGTTTACTTTCTTTTGAACTAGTCATTTTTTTAAGGAGTGTTCCAACAAAGCACATAAATTACCTCCAACTCCAACAATGAGCACAGCAAAGCAGCCGAGGCAAAGAACCTTCATGTTTATATCCATGTCACTTATTCTTGGCAGAGCTGCCGAACATAGGACTTCTGAACATTGTTGGCCAAATTTGACTTCTACAACAGGAAGCACTGACTGCAGAAgtgagaaacaaatatatatctaGGAGGGTGGAGTGATTATGCAGCAGCACTAAGTGGAGACTGTTTTCTCTAATGTGTGAAATTAGACCAGAACCTGTATGAAGGTGCACGTTTTATCTTGATAGCTACTTGACAGAACTACCAGCGTGTGACAAGAAAATACCACAGTTATCAGCAtttgcaaaagaaacaaacagattcCTCAATTTTTAAGCTTCAATCAAACATCTAATTTCTCTTTTTCATCTAATgggaaattaaagttttatagAGTTGTATGAATTCCTCAATTGTAAcctaacatttacattattagaAAAGCAGAAGAATGTATAcgctttatgtgtgtgtgtgtgtgggggggtttcACCTCAGGCATAAATAGCATTTCCTGTTGctacacaacacaaaatgtaGTAAAATGACTCATCTATGACACCACAGCCTCACATTAAAACCCTTGGACTTTATTGACATAAATAGAACCAACAGACACCAAGAGCTCCCAATGTGGAGGCCAGAGCTCTCAGTGTCCGAATGCTGCTGGAGGTGCGCTCAGTCAGTCCTTCTCCCAACTGGAGAGGGGCGGTGATGTGAGGAGTCCTGCACAGACAGAGGGGTGAGGTTGAGGTGGGGGTGTGTCCTTCTGCGTGTCAGGTCTCGATGCCTCTCTCCCTGAATAGCTGCTGCAGTCTTTCCTCCAGTATGGCGTTGGTGCCCCGCAGTCCCCTCACCACTTCCGCAGCCCACAGAAAGTACTCCTGTACTCGCTCTGGTGTCCAGCCAGTGGGGGTGGTGCGGTTGAGGTCCCTCAAGTTGTACAGTTTGTCTGCCAGTTTGACCAGCTTGGCCTGGTAGCTGCAGTGGGGAGCGTGCATTACTTGCAGCCGCTTCCTCTCCTGCTTGGGCAGGGACTTGTCATCCGTCACCTCCTGGACGATCCGTGCTACCGTCCCCCCGAAAACTCCCTCCAGCTCCCCCAGCGTGGTGTCAGTGTCTTCCACTGTGTCATGGAGCAGAGCTGCCTGTAAAACTGCGATGTCTGTAATTCCACATTCATGACTCAAAATTCTGGCCACCCCTATAGGGTGGTTGATGTAAGGAGTGGCTTCGGGGTCCTTACGCCgttgatttttgtgtttctctgctgCAAAGTTCACTGTTTCCAATAGCAAAGCCGATTCGAAATTCATAATGTTAATGTACGATGCAGCGGCAGGGTTGTTGGTATATAAAGAAAAGTTTGATTCAATATTGTCTTCTTCCAACTACTACGCCTCCTCGTggcagaaaacagaaatgtagcTCTGGACGCAAATCGAGACAATACAGTCGCACCCCCGTAATGCGCCCTCAACGCTATAAACAGTACGTTGAAAGAATTGGAAATCAACTCTATTCTATATGCATATGactaatacattttctgatgaCAGCAATTTTTAAGAATGAAAGGGTTTAAAATCCAGCGTCACAATGTCCCCTTCCAATCCTCCCGGATGTGTCGCGCTTTATTGTTGTCCGGGCTCCTACAAGCACACGCAACAGTGCTTCCGCAAGAAGGGAAGCAGTAGCAGGGACAGCTGTGAGTCCCTGTGGCTGCCTTCTGCTCTCATGGCTCTCAGCAGCAGGAGAGATGCCCCAGAGCCCCCTGACTTCTCCCTTCTGAAGAGGCTGGCAAGGGACCAGCTTATCTACCTGCTGGAACAGTTACCAGGGAAGAAAGATCTGTTTATTGAAGCTGATCTCATGAGCCCACTGGACCGCATAGCCAACGTCTCCACACTCAAGCAACATGAAGTGGACAAGCTTTACAAGCTGGATAACAAGCCCATTGTCAGCCTCTGTGATCAGCTGTGCTTCCTCATTCGGCCACGGATACAGACTGTGAAGTGGATTGCTGAGATTGTGAACGTAGACAAGCAAGCGGGGAGATTCAGAAGGTACAAGATCATTTTCACCCCACAGAAGTTCTGTGCCTGTGAGACAGTTTTGGAGGAACAGGGGATATATGGAGATGTCAGTACTGATGAATGGGCATTCTACCTCTTGCCACTCGATGATGACATCATTAGTATGGAGCTTCCGGAATTCTTCAGAGACAACTTCCTGGAAGGGGACCAGCGCTGGGTGACGACGGCAGCTAGGGCCTTACACCTCCTGCACTCTCTGTACGGCCCTTTCTCCAAAGCATATGGGATTGGTCGCTGTGCCAAGATGACATACGAGACATGGCGAGAGCTAGTGGAGGAGGGAGAGCAGAAAAGCCAACAGCCTGAGATCGGGAGCGTCTTCCTCGTTGACAGAGATGTGGATTTTGTAACTTCGCTGTGCTCCCAGGTTGTGTATGAAGGACTAGTGGATGATATATTCAGGATTAAGTGTGGTAGCGTGCAGTTTGGTCCTGATGTCACTTCCTCCGAGAAGAGTTTAAAGGTGATGCTTAACTCTCAGGATAAGGTGTTCAATGAGATCAGGAATGAGCATTTCTCCAATGTCTTTGGATTTCTGAGCCAGAAGGCCCGAAACCTTCAGACTGCTTATGATAAAAGGCGTGGGATGGATATTCAGCAGATGAAAACGTTTGTCTCCGAGGAGCTGAAGGGGTTAAAACAGGAGCACCGCCTTCTGAGTCTGCATATCGGGGCCAGTGAGTCCATCATGAAGAAGAAAACCAAGCAAGACTTTCAGGAGCTGTTGAAGACGGAGCACTCTCTGTTGGAAGGATTTGACATCCGGGAGTGCATTGCCTACATAGAGGAGCACATCGACAGGCAGGTCTCCATGATTGACAGCCTGCGTCTCCTGTGCCTCCTGTCCCTCACTGAGAATGGTTTACTCCCCAAGGATTACCGTTCCCTGAAAGCTCAGTATCTGCAGAGCTATGGCACAGAGCACCTGCTGACCTTTGCCAACCTGCGCCAGTTGGGCCTGTTGGTGGAGCAGCAGCCTGGGGAGACTCTCACAGCCATGGAGAGCAAAGTAGGCAAACTGGTCAATGACAAGACTGCAGGGAAGCTGACTGATGCCTTCTCGTCTCTGGCGAAGAAAGGCAATTTCCGAGGGCTGAGTAAGAAACTGGCTCTGGTGCCCAAGTCAGGTGGAGAGTACGACCTGCGCACCCCTCGGGATATGGCCTACATCTTCAGTGGTGCCTACATCCCTCTCAGCTGCAAGCTCATTGAGCAGGTGCTGGAGCGAGATAGCTGGACGGGGATGGAGGAGGTCACACGGCTGCTCAATGGGAATGAGTTTGCAGTGACAGGTAGCAATGGTACCGAAGTCAGGCCCAGGACAGACTCCCAGAACATCATCCTGGTCATGTTTCTGGGCGGCTGTACCTACTCTGAGATCTCAGCACTGCGCttcctggggagagagagagGGTACAAATTCATTGTGGTGACAACCGCCATCACCAACAGTGCCAGGCTGCTGGAGGCCCTGGTGGACAGCCGAGCCTGACTCCCCTGCAGCACTTTGTGAAATGGCAGCAGGGAGCTCCCATAGGAATGACAGAAAAGGAGGGAAGCTGTGCTGAGCGACACTCTGGGTGGCGTGTTAGTGCCTCATTCTTTAtgagaggaaagaaaaggcaTTGGCGTTTCTGATGGTCAGACATTCTGCTAAAGTGggactaatttatttataaaatacatgtatttatatttcttcacAGTCACAAGAGAGACAACAAACTTTATCCAAGCTAGTATTAAGAGAAGACCAGGCAATTCAAACTCCCTACAACCTTTGTTTATCTTGCCTGATTAGGTCCCTTATTCCATCAAATGTTTTACATTCTAcccttaataaaaataagtacagTTATGTGCACTATAAGTATACTTTACTATATACTTAAGGTGTACTGATTGCATGCCTAAGTAATCTGAAAGTGTGCTTATCTGTACTTCTTTCTTGTAAGGGTAGAGgaggaatttaaaatatatgaccAGCAGGCTCAGAAGGCCTCAGAGTATTGTAAACTAATCGTGGCACAGGATTTGTGATGTAaaacaacaagacaaaaaaagaatCCAAGAAAGGTAACTGACAATAAAGAAATCCATTTCATGCAATTGACATGGTGGTACATTTCCTGTGCCTTCCTGTTGAAGGGTATTTATATGACTTTACATCAGATCATAGGCAGACATAGATGCCAGGCTGCTCTGGAAACAGGTGGAGGGGTTTCAGACAAGGCAGCAGAACTCATGTCTTTACAGACGT

Function

symbol description
vps33b Acts upstream of or within intrahepatic bile duct development. Predicted to be located in late endosome membrane and lysosomal membrane. Predicted to be part of CORVET complex. Predicted to be active in lysosome. Is expressed in gut; liver; and pancreas. Human ortholog(s) of this gene implicated in arthrogryposis multiplex congenita; arthrogryposis, renal dysfunction, and cholestasis 1; cholestasis; and kidney disease. Orthologous to human VPS33B (VPS33B late endosome and lysosome associated).

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 33B

GO: NA

KEGG:

id description
K23281 VPS33B; vacuolar protein sorting-associated protein 33B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007624 True 4551 mRNA 0.47 27 24032553 24045372

Neighbor

gene id symbol gene type direction distance location
AMCG00007626 NA coding downstream 1983 24022553 ~ 24030570 (-)
AMCG00007627 LOC106587701 coding downstream 10608 24017465 ~ 24021945 (-)
AMCG00007623 NA coding downstream 20925 24004839 ~ 24011628 (-)
AMCG00007628 NA coding downstream 35161 23996928 ~ 23997392 (-)
AMCG00007615 spg21,LOC107594761,LOC107685233 coding downstream 65910 23961967 ~ 23966643 (-)
AMCG00007625 NA coding upstream 7100 24052472 ~ 24055090 (-)
AMCG00007629 NA coding upstream 32780 24078152 ~ 24100673 (-)
AMCG00007630 crtc3,LOC107701275,LOC107695354,LOC107757665,LOC107596420 coding upstream 69183 24114555 ~ 24148021 (-)
AMCG00007635 iqgap1,LOC106562619,LOC107730269 coding upstream 104972 24150344 ~ 24186890 (-)
AMCG00007634 NA coding upstream 206094 24251466 ~ 24256041 (-)
G25058 NA non-coding downstream 1249 24031035 ~ 24031304 (-)
G25024 NA non-coding downstream 71710 23958476 ~ 23960843 (-)
G25021 NA non-coding downstream 74371 23957980 ~ 23958182 (-)
G25019 NA non-coding downstream 77141 23954421 ~ 23955412 (-)
G25014 NA non-coding downstream 106316 23924239 ~ 23926237 (-)
G25075 NA non-coding upstream 2288 24047660 ~ 24048480 (-)
G25076 mfap1,LOC102796914 non-coding upstream 3852 24049224 ~ 24049437 (-)
G25077 NA non-coding upstream 4181 24049553 ~ 24049784 (-)
G25078 NA non-coding upstream 4443 24049815 ~ 24050073 (-)
G25079 mfap1 non-coding upstream 4776 24050148 ~ 24050436 (-)
G25026 NA other downstream 59888 23971671 ~ 23972665 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other downstream 612250 23406928 ~ 23420303 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other downstream 1456099 22561496 ~ 22576454 (-)
AMCG00007565 gatm other downstream 1674107 22340599 ~ 22358446 (-)
AMCG00007500 NA other downstream 3559634 20462504 ~ 20472919 (-)
AMCG00007637 NA other upstream 217318 24262690 ~ 24281564 (-)
G25422 NA other upstream 1218960 25264332 ~ 25264951 (-)
AMCG00007684 shf,LOC108430988 other upstream 1585420 25630792 ~ 25631592 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other upstream 2008392 26053764 ~ 26070848 (-)
AMCG00007704 NA other upstream 3312359 27357731 ~ 27370519 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035078 vps33b coding NC_007118.7 CM002891.2 50376097 ~ 50395395 (-)