AMCG00007627 (LOC106587701)


Basic Information

Item Value
gene id AMCG00007627
gene name LOC106587701
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24017465 ~ 24021945 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007627
ATGGATCAGTTTGAAGAGGATTTAGTAAACGCACTTAAAGAGGTTGTCAGCAATAGCAACTGGCAATGTCTGGGGGAGAGAGATGCTTTTAAATCTCAGTGCACCAAGCTTTATTCACAGGATGGTGAACACATGGTCCTTGTGCACACTGGAGATGACCGATTCTGGGCTATGGATTCAGCCTGTCCTCATGAAGGAGGCCCTCTTGACCTTGGTGATATTGAAGACATTGGCAATGGAAAATTGGCATTGATCTGCCCCTGGCATCACTTTGACTTCTGTCTTGACACGGGGACGTCCTCCACAGGGCTCCAGAATCAGGTCTATGAGGTCCGTGTGGTCAGTGGAAAGgtttacataaacacacagaacacacttTCACTGAATTCCATTCACGGGAGCGACTCGGTTCCTCATGGTTACCACCAGATGAACCTCTCTCTGTGCCTTCTGAAGATACCCTTTGTTTCTGGGCTACTAAAATTCTCTGCACGTCTGACCCAAAAGAGAAGAAATAGTACAGTAGAAATGACACACACTGATCTTCTAAACTCTTCTAAGGTTGCCCTGACTCAGGAAGTACAAGAGAGGTGGAACTCTGGGAAGATTACAGACGTGGGTCAGGCAGTGCCACCAGAACAGCCCAGCCGGAAGGAGGGTCTGACGGTGTTGCACCCGGGGAAGATCAAGCGTGGTAAAGGAGGTACACTGgCCAGCAGGATTGCCTTGCTGCACTCTCTGGCCAACATCGAGCAGTGGGCCATAGACCTGTCCTGGGACATCATCGCCAGGTTCTCTGCAGTCCGGCTCAGCAACGGagagccactgcccccccagTTCTTCAGCGACTTTGTCAAGGTGGCCGGAGATGAGGCCAAGCATTACCATCTGTTAGAGCAAAGGATAACAGAGCTTGGCAGCTTTTTTGGGGCTCTACCTGTACACAATGGGCTGTGGCAGTCTGCTACTGACACGTCCCAAGACCTTTTGGCCAGGCTGGCGATTGTGCACATGGTACATGAAGCCAGAGGTCTGGACGTGCACCCCCAGACTCTGGCCCGCTTCGCTGCCCAGGGGGACCAGAGCTCGGTGGAGGTACTGGAGATCATCTACAGTGATGAGATCACACATGTGGCCACTGGGCTGCGCTGGTTCACCTACATCTGTGCCCAGGAAAGACGAGACTGTCTGTCTGCCTTCCATGAGTTGGTGaagcaacattttaaaggaTACCTCAAACCCCCTTTTAATACTGAAGGAAGACAAACCGCAGGAATGACAGAAGAG

Function

NR:

description
PREDICTED: uncharacterized protein HI_0077-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007627 True 1287 mRNA 0.51 11 24017465 24021945

Neighbor

gene id symbol gene type direction distance location
AMCG00007623 NA coding downstream 5837 24004839 ~ 24011628 (-)
AMCG00007628 NA coding downstream 20073 23996928 ~ 23997392 (-)
AMCG00007615 spg21,LOC107594761,LOC107685233 coding downstream 50822 23961967 ~ 23966643 (-)
AMCG00007609 pcsk6,LOC107662249,LOC107742302 coding downstream 130798 23845592 ~ 23886667 (-)
AMCG00007610 snrpa1 coding downstream 182827 23831169 ~ 23834638 (-)
AMCG00007626 NA coding upstream 608 24022553 ~ 24030570 (-)
AMCG00007624 vps33b coding upstream 10608 24032553 ~ 24045372 (-)
AMCG00007625 NA coding upstream 30527 24052472 ~ 24055090 (-)
AMCG00007629 NA coding upstream 56207 24078152 ~ 24100673 (-)
AMCG00007630 crtc3,LOC107701275,LOC107695354,LOC107757665,LOC107596420 coding upstream 92610 24114555 ~ 24148021 (-)
G25024 NA non-coding downstream 56622 23958476 ~ 23960843 (-)
G25021 NA non-coding downstream 59283 23957980 ~ 23958182 (-)
G25019 NA non-coding downstream 62053 23954421 ~ 23955412 (-)
G25014 NA non-coding downstream 91228 23924239 ~ 23926237 (-)
G24955 NA non-coding downstream 304171 23713039 ~ 23713294 (-)
G25058 NA non-coding upstream 9090 24031035 ~ 24031304 (-)
G25075 NA non-coding upstream 25715 24047660 ~ 24048480 (-)
G25076 mfap1,LOC102796914 non-coding upstream 27279 24049224 ~ 24049437 (-)
G25077 NA non-coding upstream 27608 24049553 ~ 24049784 (-)
G25078 NA non-coding upstream 27870 24049815 ~ 24050073 (-)
G25026 NA other downstream 44800 23971671 ~ 23972665 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other downstream 597162 23406928 ~ 23420303 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other downstream 1441011 22561496 ~ 22576454 (-)
AMCG00007565 gatm other downstream 1659019 22340599 ~ 22358446 (-)
AMCG00007500 NA other downstream 3544546 20462504 ~ 20472919 (-)
AMCG00007637 NA other upstream 240745 24262690 ~ 24281564 (-)
G25422 NA other upstream 1242387 25264332 ~ 25264951 (-)
AMCG00007684 shf,LOC108430988 other upstream 1608847 25630792 ~ 25631592 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other upstream 2031819 26053764 ~ 26070848 (-)
AMCG00007704 NA other upstream 3335786 27357731 ~ 27370519 (-)

Expression


Co-expression Network