AMCG00007630 (crtc3,LOC107701275,LOC107695354,LOC107757665,LOC107596420)


Basic Information

Item Value
gene id AMCG00007630
gene name crtc3,LOC107701275,LOC107695354,LOC107757665,LOC107596420
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24114555 ~ 24148021 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007630
CAACAGCGGATTTGTTTGCAGATCATCTGCTGTGCACAGTTGTTTTTCAACAGTGGAGATCAAAACAAACTGAGGAATTGCTCGCCTCCCATTTGCTCTTCAATCGCCCGAGTATTTTTGCTGTCTTTTTCAGTCCGGTTGAAATTGTTGGGACACTTGTTGAAATTTCCAAATCTTCGCTCACTTgcattggaaataaatacaggcGGACGTTACAGTGCATTGGACGAGCAGTGGCGTCTTGTTGGACCAAACGTGTGCAACTCCACAGCCGTGTTAAACTAATGGATGAGTGTTTTATGCAGATTGTGTCTACTTTCCTGCATTTGCTATCGATTTCGCCGTGGGAGCTGCTGTAATATGGAGTCTCAGTAGTGAGGATGGGATGTTCTGTTATCGGGGTTTTGACGAGGTGCTGCTCCTTTAACTTGGCTCGTTTGACGTGCACTTTTTGACATGACCCTCTAACTACATTAACAAATACCATATTTTTGTAATCGGAACAAATCAGAACTATTTTTCTCTGTCGGATGATCGAGGCTCTAATATATTGAGACTTTCCAAAGCCTGCTATAGTTATATTgctaaaaaaatactttcccaAAGCTGGATTTCTAAAATAGAtattaaaaggtttattttttaacataccTGGCTAGATCAACTTCAATtgcttattttagtttttgactGCTTCAAAAGTGCGGATAATACTTTTGTAAATTTGATAACGCAGGATGATGACAGACCTCCGGACTGTCAcgcattatttttaatattaaaagtatatcTTTACTTGTTTACGCACAATCTTATTTAGCTACCCTCTTGACACCATTTCAGACAAGGAGCTGACATCCCGGACAAATGGATTGAACTAagtagttgtattttatttttctcttcaatttTTCTATAcgcattttatatattttttactaaaataaatcgTTCAACTGGTGGAACTGTGCGGCCCACACCATGTCCGGATCCCCGGGCTCGGGTGGCTCCAACCCCCGGAAGTTCAGCGAAAAGATCGCGCTGCACAACCAGAAACAGGCCGAGGAGACGCGGGCCTTCGAGCAGCTGATGACAGACCTCACTCTCTCTAGGGTGCAGTTCCAGAAGATCCAGCAGCTGCGCTTGTCTCAGAGCCGGGCACAGTACTATGGCGGCTCACTGCCCAACGTCAACCAGATCGGAAGTGGCAGCGCCGACTTCCAGGCTGCTTTCCCCTCAGGTCTGGACAGTGTGCGAGGGACGCGGCACCATGGCCTGGTAGAGAGGAGCTCTCCGTATGGATCGGTCTACTTGTCCCCACCCCCGGATAACAGCTGGAGAAGGGAGCAGCAGTCCTGGAGTGAAGAAAAAAGACCTGGATTTAGATTAATATCCCAGCTCAACAGGACGAACTCCGACTCCGCTCTGCACACAAGCGCCCTGAACCCCAATCCGCAGGACGCTTTCATGGGGATGAACCAGCAGATGGGAAGGGGACCCCCACAGCGCAACGCCAGCGTCAATGAAGCTGAGGTGGATGGCTCGGGGGATGTGTTTTCCTTCCCAGCCTTACCAAATGAGGAGGGCCTGATGGGGGTCAGTAAACCTCTGCCCAAACAGCTGTGGGAAGCCAAGAAAGTGCAGTCTCTGTCTTCGCGCCCTAAATCCTGTGAAGTGCCTGGAATCAATATTTTCCCATCCCCGGAGCAGAATGCAGGGCTCTCACATTTCCAGGGGTCGTTAAACACGGGAGGATCGCTGCCGGATCTCAGCAACCTGCACTTCCCCTCGCCCCTGCCCACGCCCCTGGACCCTGAGGATGGGACATACTCTAACCTGAGTGGGGGCAGCAGTACCGGCAACTTGCCCGCTGCCATGATGCACCTGGGCATTGGAAACTCGCAAGGTCTCTCCTCGTCTCTGAGCAATCCTTCCATCCAGGCCTCCCTCAACAACTCTCAGCTGCACTCGTCTCTCAGCAACCCCTCCATCCACTCATCCCTGCGGCTGTCCTCACTGTCCAACCCCCCACCGGCGGGCCTGAGCAGCTCCCCAAGGAGGCGCCCCACGCCGGTCAGCCCCCTCACCTTGTCCCCCGGGTCCGAGCAGCGCAGGGGCCTGGGCAAGCAGCTCTCGCCCACAAtgtctccctccctgtcccccATTACCCAGCATAACAGCATGGGAGCGTTCTTTGGCGATCCCTTCGTGGACGCACAGCTCTCCAGTCGGCAGTCCAAGTCCTTGTCTTACCAGcTCGACCAGTTCAACATGCTGGAGAGTGCTATGAGCTCTGTGCCTGGGGGCAGCTGCTTCGACCCCGGCTCCAACCTCTGCTATTCCCAGGCGGCGCTGATGGGGCTTGGCGGGAGCCATGGCAACCTGCAGGACTCACTGCAGATGAGGCAGAACATGCTGTTTTCCAACTGCGGGGGGGGCGTCCCCAACATCATCCTCACAGACGAGTCCAACCCCAACATGTCCAAGGACATCAGCAGCGCACTGGCGGTGGTCCCGGAGTGCTTTGACTCGGAGGGGGGGTTCCCTCTGGGAGACGAGCTGCGCATCGAGCCCCTCAGCCTGGATGGCCTAAGCATGCTGAGTGACCCCGACATGGTCCTGCCTGACCCCTCTGTGGAGGACACCTTCCGCAGCGACAGACTGTAGGAGAGCGGAGGGGCGGAGGCATTGTGCTCCCCTTACAGagttataaacacacacacacacacacacacacacacacacacacacacacagtcggGCACAGCTAGGGCTCATGGCTGTAGGTGCCCTGCCACTCActcaagagagggagagatccTTGTGTAAATccgagggagagggggaggtggaAAACTTTcccatacagacacacacaaacgttTACATACTAGGTGAGAAGAATTTTAGCTTTCTAAAAAATACTGCCCACAATAAAGCTGtgcatgcacaaacacaaacacacacacgcacacataacAGAATAGGGGTGTGATGGCTGTGTATTATGAGGAACCCCATTTTACACCAATACACACATAAGCAAAAATCTTTGCACTGTGAGCTTTAAATGTCTTACTCACTGTTCTCAGCCACAGGGCAGACCTGGTCTTCTGCAGTTTTCCTCCTCTTAATATCCCTAATCAaaattaccaaaaaataaatcctctcACCTCATGACCCTTGACCCCAGTGCCTGGCTCTCGTCAGCTCTAGAAGCACAGGCAGCGTGGATGTATCGGCACAGGTCTGTGAGCAGATGACACAGACGGCAACCCCTGGCTTGTCTGCTGTATTCCTCTGCATGACTTACTTCCTGCCAggtgtttgcttatttaattaGGTGTGTTAATCAAAGTGAAGCGGATGCACACAGATCCTGCACTCGGGAGTCCTGAGTTTACATGGCATGGTGTTGGGTGTGGGAGAAAATTAGATTCCTACCCTTCTTTTAATTGCCAGCTCACATTGAGACACTGCAAGCCATGTTCTCGCATACCAACAGAGGCAAAGTAAGCCCCTTTGTCGTGCCAGCACCAGCAAAATCTACAGGTGGCGCAGCCCCCCAGCACCCAAGCCATTGAGGTAATAATACCAGCACTTTTAGTCCCCTGTACCCAATACAAGCCAGCTACCCGGCGCAAGCCAAATTTCCCCCTACAGGCCAATCcctcggggtgggggggggggatgaagATATCCTAGAGGTTAGGGTAAAAAGAAACGAAAATATGACGCAATTCAACGCAAGAATTGCtattttttatgcagttttgattcttaaaatgttttacatatgttttctttttgtaatgttgTTTGCCACAGATATTTTTGCTGTCagtttagaatgtatttttaaaaacaaagaagggGCAAACTGtgcacaaagcaaaacagcagacaacaacaaacacaaaatattgtgtTGCAATGTCTAAGAGCTGGGAGGTTGTAGGTATTTTTTTTAGGATTATCGttatcattattactgttattgcaAAAAAATCCTTCTTATCTATAGATCTGTGTAAGAGCAGATGCCACTTTGGCCCCATTGAGAGTGATGATCTGATTTTGGAGAGCTTTGCTTTGAATTATTAAGATGTCAAAAGTTTAAAAAGGGGATCCGTGTTACTTGTTACCCTAGTAGCATCGCCCTTCTGTTTTCTGATTctgcataattaattattataatgcagCTGGCACCGATCTCAAATCTCTTTCTGTTCCGAGCTTCAAATCAGTGTGGGTGATGCAACGAGCTTTACATGACCTGGTCACATAGTCTTGATACGATATTTATGATGTCAAGTTCCCCTTCCCCTAAGAGAATTACATTACCAGCACTGGAATGACCAGAATGGCTGTTGATCCTGTCGGTCCTTCCTTCTTCATCTTCATTTACAATGGCAGAATGCTCATGAGAGGATGTATACCATTGACTTAAAATCTGAGGGCTCTCCACTGAGAGAAAATCATGCATCAAAAAGACAGACTGGTAGtgataaataaaattatgtatGCAGTGGATGTAACATTGCACTTTTTGCTCTctgggatgtgtgtgtgagagagaaattTGCACTAAGATCTTTTACGGGAAGttccatttataatttaaaagctGAGGACGAAATGCCATATTTGCTGTTTCAGTTTGAAGAGCACGGAGACTGATTTACATATAATTCAAAAGCAGTAGTGGGTTCACTCGGTCCCCAAGGGAGAATAATGCTGTGTGTTTTCAAGATGCTTTCCAGTAATCAGAAGCTTGTAAGAGGTGAATTTGGCTGTACTTGATTAATTTGTTCAGCGACGATGCATTCAGGATCGAGCCTCTGTTTGAGAGAATTATACCTGTTCATTAAAagtatttgtctttttcttgaTCTGTAGAGTAACTAAATCTGTTTGCTGCAAGGCCCAGTGCAAACAAGGCTTATATAGAGTTCATTTTGAGGAACATAGAGCCACCTGCTGTCCAGTTCTTGTACTTCTGTTTCCGTTTCCGTTCCGTTGTTCATAGCTCAGTTTGTTCCAGCACTAATAATGCTCTAGATATTCCGACAAAATAGAATTTGAGTCACTTTAAAATCACTCCCtttttatacttaaaaataaataattgaatactgAAAGCTTTATCCAGTATATTGGCACAGCAGTCCGTCATATTTGTATCTATTGTGGTGGAGAAGGGGGAAGGTATGGATCGAATGGACtcttgatcttgatcttgatcttgatcttaCTTTGTACAGACTGACCATGTGCACTACCTGTAAAAGCAAAAAGAGATTTGAGAGAGTTCTGCAGAGCCATTGCCTCCcatcactttaaaatatttgttgttgttgttgttgttgttgctgttgctttctttttctaCCTGTAGAGCCGTGTTGTATTTTCCTATTGCCTTACAATCATGTAGACCGAGGGTGTTGCAGCTGTGAGAACAGAGATCACAGTGTGATTATGAGTCTTTTCTTCAGTGTTGGCCTGATAcctaccccctcccccacaaaATAAAAGCCATAAGGTTTGTTACAGGCTCTTAAATGCCCCTGCCACTGACTTCAcagcaaagacaaaaaaagaacattatACTGCAAAAGAACATATTCTTCTGTTCTCCGGTTCTTACTTATGATTCACTTTTCTTTAGTGTTGTGTAATGAGAGGGCTTGGCAGACTAACCCCAGCTTCCCTCCCCACTCCTGCTTTCTGAAACTCTTGGTCTGGCCACATCGCCGGTAGCAGGGGGTGGTGTCTGCTGTCACACCCCTCTCTGTGGGACAGAATGACCCTTTCATCTGTTGCCTTAATTcgctgacctctgacccccccccagccccgctTATACTGTGACGTTTGGCTCCTTTTCTCAACTCTGCTTCTTTTTTCGCTATATCATTTCTgcttcttttcatttgtttggtttgtttgtttgttataccagacttttattattgatgttagaactattaatgttattaattttgttctagaaggaattctttttttttttgttaccttTCAAAACAGTGTACAGTTCtattatttaaagatttttttttcttgtccactagtttttttttccgtttgtttttccttttttgtaatatgtcatttaaaatctttctttcggatataaaaaaattactacaccagtgtggctttggcctctgtgttgtttgttgtgCTGGTCAGTCCCAGGAGGGGGCAGTGTTGCTTCACACTATGTGTAGAACACTTGAAAGTTCACACGCGTGTGGTCAAACTCATTCAAGTCCCTGGCTGGAAGTGTCATGCATGCAAATCTAAGACTGGTTTTTCTCATAACTGGTCTTGTGAATGGTCAGTCGGAGCCAAAGCTAGAGAGAGGGGTAAAA

Function

symbol description
crtc3 Predicted to enable cAMP response element binding protein binding activity. Acts upstream of or within response to hypoxia. Predicted to be active in cytoplasm and nucleus. Is expressed in head. Orthologous to human CRTC3 (CREB regulated transcription coactivator 3).

NR:

description
PREDICTED: CREB-regulated transcription coactivator 3 isoform X2

GO: NA

KEGG:

id description
K16334 CRTC3, TORC3; CREB-regulated transcription coactivator 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007630 True 6398 mRNA 0.46 14 24114555 24148021

Neighbor

gene id symbol gene type direction distance location
AMCG00007629 NA coding downstream 13882 24078152 ~ 24100673 (-)
AMCG00007625 NA coding downstream 59465 24052472 ~ 24055090 (-)
AMCG00007624 vps33b coding downstream 69183 24032553 ~ 24045372 (-)
AMCG00007626 NA coding downstream 83985 24022553 ~ 24030570 (-)
AMCG00007627 LOC106587701 coding downstream 92610 24017465 ~ 24021945 (-)
AMCG00007635 iqgap1,LOC106562619,LOC107730269 coding upstream 2323 24150344 ~ 24186890 (-)
AMCG00007634 NA coding upstream 103445 24251466 ~ 24256041 (-)
AMCG00007644 ppip5k1,LOC105015023 coding upstream 220610 24368631 ~ 24403122 (-)
AMCG00007648 NA coding upstream 315706 24463727 ~ 24464347 (-)
AMCG00007643 NA coding upstream 323014 24471035 ~ 24479836 (-)
G25079 mfap1 non-coding downstream 64119 24050148 ~ 24050436 (-)
G25078 NA non-coding downstream 64482 24049815 ~ 24050073 (-)
G25077 NA non-coding downstream 64771 24049553 ~ 24049784 (-)
G25076 mfap1,LOC102796914 non-coding downstream 65118 24049224 ~ 24049437 (-)
G25075 NA non-coding downstream 66075 24047660 ~ 24048480 (-)
G25175 NA non-coding upstream 199078 24347099 ~ 24347419 (-)
G25176 NA non-coding upstream 202009 24350030 ~ 24354310 (-)
G25177 NA non-coding upstream 220148 24368169 ~ 24368373 (-)
G25239 NA non-coding upstream 285059 24433080 ~ 24507819 (-)
G25248 NA non-coding upstream 350344 24498365 ~ 24542158 (-)
G25026 NA other downstream 141890 23971671 ~ 23972665 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other downstream 694252 23406928 ~ 23420303 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other downstream 1538101 22561496 ~ 22576454 (-)
AMCG00007565 gatm other downstream 1756109 22340599 ~ 22358446 (-)
AMCG00007500 NA other downstream 3641636 20462504 ~ 20472919 (-)
AMCG00007637 NA other upstream 114669 24262690 ~ 24281564 (-)
G25422 NA other upstream 1116311 25264332 ~ 25264951 (-)
AMCG00007684 shf,LOC108430988 other upstream 1482771 25630792 ~ 25631592 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other upstream 1905743 26053764 ~ 26070848 (-)
AMCG00007704 NA other upstream 3209710 27357731 ~ 27370519 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035081 crtc3 coding NC_007118.7 CM002891.2 50548074 ~ 50633285 (-)
grasscarp (Ctenopharyngodon idella) CI01000358_00317209_00328056 NA misc CI01000358 null 316699 ~ 328273 (-)