AMCG00007631


Basic Information

Item Value
gene id AMCG00007631
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24192221 ~ 24194481 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007631
GAAAACTTTGGCACGTCTGAGAGCTTCCGAACACCAACCCCTTGCTTTGACTCGTCTCTTCCAGGGCCGCTTCAGCACCGAGGACAGCGCCGCGGGCCACCGGGCAGCACCATGGACAACTCGGCGGTGCTGATCGGGCTGCTCTGTGCCAGCTTCGTGGTGGTCCTGTGCCACGGCCAGTCCTCCCGGGAGATTTCCACGGAGGAGTTCGCAGCCAAGAAATCCCCGTCCTCTACAGAGAAGGAACTGGTGGAAGCGATGGAGGAGCTGCTGGGCAAGTTCCAGAACAGATTCCCATCCTATGAGAAGAAGGGGGGAACTATCCCTATGTGTGATGTGGGGGACCGCTGTGCCATGAAGCAGGGGCCCCGCATTGGGAAGCTCTGTGACTGTGCCAGGGGCAGCAACTGCAACTCCTTCCTCCTCAAGTGCATATAAAGTGGAGAATGTTGCCCTCTACTGCAGAGGCACAGAACTGCATCTGATCGACATCCAACCTGCCTGATACGAACTCCAAAACGTCTTGCTTCCATGATAACCAGTTCTAAACACTGTAGTGTCCATGGATACAGCAACCATTAAATAATTGAcatgttaataatcataacCTCATAGGCATTAGGTATGCATTTCATCAtataatttatctttttttttggcaaacttaTAATTACAGGATTCTTCTCTGTTTATTGAACTTTTGCCTTTAGTATATTTTGTTGGCTGTTTGTGTCAAAAGGGGGCGACTGAAACATGCAAACTAAACCCAGTTAATGTATTCTGTATGTTTGAAAAGAAGTCAAAATTGTACGTGTATGAAATGGGACTCACCTGGcaacaaataaatgtacttttaatctTA
>TU31514
CACTAATAGAAGCACTTTGCAGGCGGGGCTACATTGTTTATAAAAGCGCCACTGGTTTGCATAGGACAGCAGAAAACTTTGGCACGTCTGAGAGCTTCCGAACACCAACCCCTTGCTTTGACTCGTCTCTTCCAGGGCCGCTTCAGCACCGAGGACAGCGCCGCGGGCCACCGGGCAGCACCATGGACAACTCGGCGGTGCTGATCGGGCTGCTCTGTGCCAGCTTCGTGGTGGTCCTGTGCCACGGCCAGTCCTCCCGGGAGATTTCCACGGAGGAGTTCGCAGCCAAGAAATCCCCGTCCTCTACAGAGAAGGAACTGGTGGAAGCGATGGAGGAGCTGCTGGGCAAGTTCCAGAACAGATTCCCATCCTATGAGAAGAAGGGGGGAACTATCCCTATGTGTGATGTGGGGGACCGCTGTGCCATGAAGCAGGGGCCCCGCATTGGGAAGCTCTGTGACTGTGCCAGGGGCAGCAACTGCAACTCCTTCCTCCTCAAGTGCATATAAAGTGGAGAATGTTGCCCTCTACTGCAGAGGCACAGAACTGCATCTGATCGACATCCAACCTGCCTGATACGAACTCCAAAACGTCTTGCTTCCATGATAACCAGTTCTAAACACTGTAGTGTCCATGGATACAGCAACCATTAAATAATTGAcatgttaataatcataacCTCATAGGCATTAGGTATGCATTTCATCAtataatttatctttttttttggcaaacttaTAATTACAGGATTCTTCTCTGTTTATTGAACTTTTGCCTTTAGTATATTTTGTTGGCTGTTTGTGTCAAAAGGGGGCGACTGAAACATGCAAACTAAACCCAGTTAATGTATTCTGTATGTTTGAAAAGAAGTCAAAATTGTACGTGTATGAAATGGGACTCACCTGGcaacaaataaatgtacttttaatctTA

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007631 False 862 mRNA 0.48 3 24192292 24194481
TU31514 True 933 TUCP 0.48 3 24192221 24194481

Neighbor

gene id symbol gene type direction distance location
AMCG00007622 serinc4 coding upstream 114873 24056196 ~ 24077348 (+)
AMCG00007618 mfap1 coding upstream 140394 24048234 ~ 24051827 (+)
AMCG00007620 hddc3,LOC107757611 coding upstream 147820 24041906 ~ 24044401 (+)
AMCG00007621 NA coding upstream 175608 24013330 ~ 24016613 (+)
AMCG00007619 NA coding upstream 184911 23997437 ~ 24007310 (+)
AMCG00007633 LOC106526729,LOC108249217,LOC107091076,LOC102219664 coding downstream 35041 24229522 ~ 24230585 (+)
AMCG00007632 tubgcp4,LOC107695351 coding downstream 61665 24256146 ~ 24261899 (+)
AMCG00007636 map1a,LOC106584644 coding downstream 142080 24336561 ~ 24349947 (+)
AMCG00007638 NA coding downstream 254841 24449322 ~ 24461405 (+)
AMCG00007641 LOC107733946,LOC107685211,LOC108428500,LOC107737001,LOC103353203,LOC107662289 coding downstream 327984 24522465 ~ 24536808 (+)
G25103 NA non-coding upstream 38373 24150343 ~ 24153848 (+)
G25084 NA non-coding upstream 104917 24085407 ~ 24087304 (+)
G25069 NA non-coding upstream 145612 24044989 ~ 24046609 (+)
G25056 NA non-coding upstream 160917 24031034 ~ 24031304 (+)
G25013 NA non-coding upstream 266067 23924239 ~ 23926154 (+)
G25134 NA non-coding downstream 17201 24211682 ~ 24213444 (+)
G25138 NA non-coding downstream 34155 24228636 ~ 24228910 (+)
G25148 cdkn2aip,LOC107757748,LOC107695352,LOC107730231,LOC107596431,LOC107701282 non-coding downstream 60309 24254790 ~ 24255913 (+)
G25196 NA non-coding downstream 246816 24441297 ~ 24469767 (+)
G25197 LOC105908101 non-coding downstream 276558 24471039 ~ 24473147 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 522142 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 998700 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 1052700 23133811 ~ 23139521 (+)
G24606 NA other upstream 1909263 22281700 ~ 22282958 (+)
AMCG00007553 NA other upstream 1925812 22263520 ~ 22266409 (+)
AMCG00007640 NA other downstream 282006 24476487 ~ 24499650 (+)
G25822 NA other downstream 3889341 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 4244163 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 4487690 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 4705577 28900058 ~ 28911566 (+)

Expression


Co-expression Network