AMCG00007632 (tubgcp4,LOC107695351)


Basic Information

Item Value
gene id AMCG00007632
gene name tubgcp4,LOC107695351
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24256146 ~ 24261899 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007632
caaaactacatttcccagaacaCACTGCGATGTTGTCACGTTGTGTCATCGAGCTGCGGCGGTTTGCTTGGCGGTGTTTTCATGTGCAGGGAAGTTCTGGTTCTGTCCCGATATAGCCCGAGTCTCGGTGGTACCTGGGTCTGGTATCACAATGATCCATGAGCTGCTACTGGCTTTAAGCGGGTACCCAGGTACCATATTTACGTGGAATAAACGGACCGGTTTACAGGTGTCACAGGACCTGCCTTTCCTCCACCCCAGCGAGTGCAGCGTCCTGAACCGGGTGTGCAAGCTGGGCACGGACTACATCCGCTTCACTGAATTCATCGAGCAGCACACCGGTCATGTGCACCAGCAGGAACACCATGCTGCTCAGCCAAACCAGTCTGGACTCCATGGGATCTACCTCAGAGCGATCTGCACTGGGCTTGACTCCATGCTGCAGCCTTACCGCCAAGCCTTGCTGGACCTTGAGCAGGAGtttctgGCAGATCCCCATCTCACCATCTCTCATGTCAATTACAGGCTGGACCAGTTTCAGTTGCTGTTTCCCTCGGTGATGGTAGTGGTGGAATCCATTAAGTCGCAGAAGATCCATGGCTGTCAGATCCTGGAAACGGTGTATAAACATAGCTGTGGAGGTCTCCCCCCTGTGCGCATGGCCTTGGAGAAGATTCTGGCGGTGTGCCATGGCGTCATGTATAAACAGCTGGCTGCCTGGATGCTGCACGGGCTGCTGCTGGATCAGAGCGAGGAGTTCTTTGTGAAGCAGGGTCCCAGTGTCGGAGGGGTGACCCCAGcccaggaggaagaggaggaagaccTGGGGATTGGAGGGCTGAGTGGGAAACAGCTACGAGAGCTGCAGGACCTGCGGCTGACTGAGGAGGAGAACATGTTGGCTCCATCCCTCCAGCAGTTCTCCCTGCGTGCCGAGATGCTGCCCTCCTATATCCCTGTGCGCGTGGCTGAGAAGATCCTCTTTGTGGGCGAGTCTGTCCAGATGTTTGAGAACCAAAATCAGAATCCATCCCGCTCTgGCTCAATTCTGAAGCATCAGGAGGAGCTGTTTGCCGCAGAGCTGCATCGGCTCAAACAGCAGCCACTCTTCAGTCTGGTGGATTTTGAGAACCTCATTGATTCCATCCGCAGCACGGTGGCAGAGATCATTAAAGATTTCTACCTGCTTGGACGGGGGGAGCTCTTCCAGGTGTTCATCGACCACGCCCAGCTCATGCTGAAGACGCCTCCCACTGCTGTCACAGAGCATGATGTGAATGTGGCGTTCCAGCAGGCGGCTCACAAGGTGCTGCTCGATGATGACAACTTGCTCCCTCTCCTGCACCTCACCGTTGACTACCAGGGAAAGGAGCCCAAAGATGCTGCTGGGAGTCGCGAGGGAGCCACACCCCCTCAGGAGTCCTCCCCCCGGGAAGTGCCGCCCACTGGCTGGGCTGCCCTGGGATTGGCCTATAAGGTTCAGTGGCCTTTACACATCCTGTTCACTCCTGCTATACTGGAGAAGTACAATGTGGTGTTCCGCTACCTGCTCAGTGTTCGCAGGGTGCAGTCAGAGCTGCAGCATTGCTGGGCTCTACAGATGCAGCGGAAGCACCTGAAATCCAATCAGACAGACGCTGTCAAGTGGAGACTACGCAACCACATGGCCTTCTTAGTAGACAACCTCCAGTACTACTTGCAGGTGGATGTGCTGGAGTCCCAATTCTCCCAGCTTCTGCAGCAGATTAACTCAACCCGTGACTTTGAAAGTATCCGATTGGCCCACGATCACTTCCTCAGCAACCTGCTGGCACAGTCCTTCATTCTGCTTAAGCCAGTGTTTCACTGCCTCAATGAGATCCTGGAGCTGTGCCACAATTTCTGCTCGCTGGTCAGTCAGAATCTGGGCCCACTGGACGACAGGGGAACTGCTCAGTTGGACATCCTAGTCAAGggtttcAGCCGGCAGTCGTTCCTGCTCTTCAAGATCCTGTCAAATGTTCGCAATCACCAGATCAACTCTGACCTGGCCCAGCTGTTGTTGCGGCTTGACTACAACAAGTACTACACCCAGTCTGGGGGGACGCTGGGCAGGTAG

Function

symbol description
tubgcp4 Predicted to enable gamma-tubulin binding activity. Predicted to contribute to microtubule minus-end binding activity. Acts upstream of or within retinal cone cell differentiation and retinal rod cell differentiation. Predicted to be located in cytoplasm and microtubule cytoskeleton. Predicted to be part of gamma-tubulin complex. Predicted to be active in centrosome and equatorial microtubule organizing center. Human ortholog(s) of this gene implicated in microcephaly and chorioretinopathy 3. Orthologous to human TUBGCP4 (tubulin gamma complex associated protein 4).

NR:

description
PREDICTED: gamma-tubulin complex component 4 isoform X1

GO:

id name namespace
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0000922 spindle pole cellular_component

KEGG:

id description
K16571 TUBGCP4, GCP4; gamma-tubulin complex component 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007632 True 2098 mRNA 0.55 16 24256146 24261899

Neighbor

gene id symbol gene type direction distance location
AMCG00007633 LOC106526729,LOC108249217,LOC107091076,LOC102219664 coding upstream 25561 24229522 ~ 24230585 (+)
AMCG00007622 serinc4 coding upstream 178798 24056196 ~ 24077348 (+)
AMCG00007618 mfap1 coding upstream 204319 24048234 ~ 24051827 (+)
AMCG00007620 hddc3,LOC107757611 coding upstream 211745 24041906 ~ 24044401 (+)
AMCG00007621 NA coding upstream 239533 24013330 ~ 24016613 (+)
AMCG00007636 map1a,LOC106584644 coding downstream 74662 24336561 ~ 24349947 (+)
AMCG00007638 NA coding downstream 187423 24449322 ~ 24461405 (+)
AMCG00007641 LOC107733946,LOC107685211,LOC108428500,LOC107737001,LOC103353203,LOC107662289 coding downstream 260566 24522465 ~ 24536808 (+)
AMCG00007639 NA coding downstream 310987 24572886 ~ 24574030 (+)
AMCG00007650 NA coding downstream 317232 24579131 ~ 24586370 (+)
G25148 cdkn2aip,LOC107757748,LOC107695352,LOC107730231,LOC107596431,LOC107701282 non-coding upstream 233 24254790 ~ 24255913 (+)
G25138 NA non-coding upstream 27236 24228636 ~ 24228910 (+)
G25134 NA non-coding upstream 42702 24211682 ~ 24213444 (+)
G25103 NA non-coding upstream 102298 24150343 ~ 24153848 (+)
G25084 NA non-coding upstream 168842 24085407 ~ 24087304 (+)
G25196 NA non-coding downstream 179398 24441297 ~ 24469767 (+)
G25197 LOC105908101 non-coding downstream 209140 24471039 ~ 24473147 (+)
G25203 LOC105015055 non-coding downstream 222387 24484286 ~ 24490748 (+)
G25209 NA non-coding downstream 292369 24554268 ~ 24564852 (+)
G25300 NA non-coding downstream 555443 24817342 ~ 24861868 (+)
AMCG00007631 NA other upstream 61665 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 586067 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 1062625 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 1116625 23133811 ~ 23139521 (+)
G24606 NA other upstream 1973188 22281700 ~ 22282958 (+)
AMCG00007640 NA other downstream 214588 24476487 ~ 24499650 (+)
G25822 NA other downstream 3821923 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 4176745 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 4420272 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 4638159 28900058 ~ 28911566 (+)

Expression


Co-expression Network