AMCG00007638


Basic Information

Item Value
gene id AMCG00007638
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24449322 ~ 24461405 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007638
ATGACCACTTTGCTTCTAGTGTTTGCGTGTTTGCGTGTCATCGCAGCATCAATCTCTGTCGAACTGTCAGACTCTGAGAGTGCACTGAGCGTCAGTGTCCCTGCACAGTCTCCACTACAACCCCTGTTGGGTGGCTCACTGGCCGTGCCCTGCTACTTCCTGGACAGCACCCCCCACGACCCTGGCGCCCCCACAGCTGCCCCCCTGGCCCCCCGCATCAAGTGGAGTCACATCACCAAGGATGGCGAGTCCGTCATCTTGGTGGCTACAGACGGCAAGGTGCGAGTCACCTCCGAGTACATGGACAGGGTCACCATGGTCAACTACCCCCTAGTGCCCACAGATGCCACCATGTTGATCACAGACCTGGCACACAGAGACTCCGGCACCTACCGCTGTGAGGTCATGCACGGCATAGAGGATAGCCAGGACACCATTGAGGTCCAGGTACAAGGTATTGTGTTCCACTACCGTGCAATCTCAACTCGCTACACCTTGACTTACGAGAAGGCCAAGGCTGCCTGTGTCCAGAACAGTGCCGTCATCGCCACCCCACAGCAGCTGCATGCGGCCTACGATGACGGCTTCCATCAGTGTgatgctggctggctggctgaccaaactgtcagGTACCCCATTCACAGTCCACGGGAGGGTTGCTATGGTGACAAGGATGAGTTTCCTGGTGTCCGTACCTATGGGGTGCGAGATGTCAATGAGACGTATGATGTGTACTGTTTCGCCCAGAGGATGTCAGGCAGGGTTTTCTACTCCACCTCTCTAGACAAATTCTCCTTTGTGGAAGCAGAAGAGCAATGTATGAAACTGGGCGCTCAGCTTGCCACCACTGGGCAGCTGTACTTGGCCTGGCAGAAAGGCATGGATGTGTGCAGTGCTGGCTGGCTTGCAGACAGGAGTGTCCGCTACCCAATCTCCATCGCCAGGCCCAACTGTGGGGGGAACCTTGTGGGAGTGCGCACTGTCTACCTCTACCTGAACCAGACCGGCTACCCCTACCCTGACTCCCGCTATGATGCCATCTGCTTCCAAGAGGACATCGAAAGTTCTGCTTTGACAACGGTTGACTACACAGAGTTCGAGACAGCAACTACAGAACTGGGAACCCTGCAGAGTGTGGCAACCTTCACAGAAGGCCCTGAGGTCTTCTTCAGAAACACCACTAAAGAGAGTGAGGTTTTAGGGGAGGTGGTCACACAGGAGCCCATGAACTTCACCGGCACTGACTTCCCCTACAGTATCATTCCCGAATTAATCTACCCTGAGGAGAATGTCACAGACCTGCCCCTGTCTCCTCCCCCTGCAGTCACTGAAGAGGATTTATTCATAAATGCAACTGAAGTAGTTGAAGAGTTCATCCCCATGGGCACTGCCCCACCTGATGCGGGCAAAGAAGTCACAAAGCCAACGGAGCTCTCTCCCACAGGCATTGTATTTCACTACCGGGTGGAATCCAGACGATACTCCCTGACCTTCGTAGAGGCTCAGCTGGCCTGTCAGAGCATTGGTGCCATCATTGCCACCCCACAGCAGCTCCAAGCAGCCTTCGAGAGAGGGTACCACCAGTGCGATGCAGGCTGGCTTCTGGACCAGTCTGTTAGgtATCCAATTGTTACTCCACGAGACCAATGCCTTGGGGATATGAACGGGCTCCCTGGTGTGAGAAACTATGGCGTGCGGCCGGCCACTGAGCTGTATGATGTGTACTGTCATGTTGATGGACTGATGGGTGAAGTGTTCCATGTTAGTTCACCAGAGAAGTTCACCTATGATGAAGCCATGTCCTACTGCCGTGAGCAGAACGCCACCCTGGCCTCCACTGGGGATCTGTATGCTGCATGGGGACAGGGCCTGGACAAATGCcgggctggctggctggctgaccGCAGTGTCCGTTACCCAATCACCGACCCCAGGCCGCAGTGTGGTGGTGGGAAAGCCGGGGTTCACACTGTTTATCTCTTCCCCAACCAAACTGGCTACCCTGATTTGTCCTCCAAATACGACGCCTACTGCTACCGGGCTGATCTTAATGCAACTGGACTGAACTTCACAGAGATTGAACCATGGATTAATGATACAGAGAGGCCTGTAATCTCCTCCATTGCTCCTCCCATCTCTGTGGAAGTAAGTAGCTCTGGTTCTGCCGGGTTGCCTTCTGGATTCTCAGGTATTGGCTCAGCAAGTACTGAGATTCCCAGTGGGAGTGAGATGCTCAGTGGGTGTGCTGAGGTGTCAAGTGGGAGTGCTGAGATGTCCACTGGGTGTCCTGAGTTGCCTAGTGGAATTCCTAGTGGAAGTGCAAGTGGGGAGAGTGGAGCATCAGCATCTGGGATCAGCGGGGATATCACAAATACCCCAGTGACCTATTTACCAAGTGGAATAGGACCATCTGGTGAGGGATCTGTGTCTAGTGGCACCTCTGGAGAAGAATTTGTAGAAGGACCTTCTGGAATTTTAATCATTTCAGGAAGTGGGTCTGGAGACTTTAGTGCAGGGTCTACTAGTGCCTTTAGTGGGGACTTTTCTGGACACATATCTGGATTTCCTGATAGCAGTGGACTCTTTGTGGAATGCGGCTCTGCATCTGACGTGATGTTTAGTGGTTCTGGAATTTCGGGAAGTGGGGACCTTTCAGGAGAGTCTGGGTTTGCAAGCACAAGTGGGGACCTTTCTGGATTCAGTGGGCAGCCATCAGGAATTGGCTTAACTTCAGCGGATTTCAGTGGCTTATCAGGAGACTTTGATAGCAGTGCTGATTTCTCAGCAATTATCCTGGTACCAGAAGAAGATATAGAACTACCTCCCACAACGAGGCCTGTTATGGAGCACACAGGTGAACGGTTTGAGTTCAGTGGTTCAGGAGATCTATTCGGATTACCCTCTGGGATAAGTGGCTTTGACAGTGGATCTGGTCCCAGTGGGTCAGCATCTGGAATCCCTGACATCAGTGGATCTGGATTCCTGGGAGTGACCTTTGTGGACCCTGGTTACACAGAGGGTACACCGAAACCTATGACTGAGGAAGAAGTAGTAGAAGGATCCGCAGAAATCCTTGAATTTGCATCTGGCGCAAGTGGATATCCCTCTGGTGCATCTGGTCTAGGTATCAGCAGCGCATCTGGGTTAATTTCTGGAGACTCCTCAGGAGAATCTGCCAGTGGGGCCTTCCCTTTCCTTAACAATGACGAGTTAGTAGAAGTTTCCATCCAGCCAACACTGAGCATGGAGCTTAGCGGAGAGGGGTCACTTACATCAGCGATGTGGGAGCACTCTGGTGCAGTGGACATCAGTGGAGATCTATCAGGAATACCTTCAGCTGACCCATGTGAACCCAACCCGTGTGGTGAGGGATCGTGCTCTGTGCGTGATGGCATTGGATTCTGTCACTGCCCACCTGGCCTGAGCGGGGACAGCTGCCAGATGGCCCCCTCCTGGCCTCTGCACCAGCATCTGCTCTGGGTCCTGTCCACGGCAGGAATCCTAACAGCGGACCCTTCATTTTTTGCAGACATTGATGAGTGCCACTCGAATCCCTGCGCCAATGGAGCTACCTGCGTCGATGGTATCGACTCTTACAAATGCTTATGCCTTCCCAGCTATGGAGGGGACCTCTGTCAGATGGACGTGCAGAGCTGTGAGGAAGGCTGGCAGAAGTTCCAGGGCAGCTGTTATAGACATTTCCCCGAGCGAGAGACCTGGGTGGACGCTGAGCGGCACTGCCGAGAGCTGGATTCCCACCTGGTCAGCATCATCACCCCTGAGGAGCAAGAGTTCATCAACTACAATGCACAGAACTACCAGTGGATCGGACTGAACGACAGGACATTGGAGAATGATTTCCGCTGGTCTGATGGATCCTTCTTGCAATATGAGAACTGGAGACCAAACCAGCCAGATAACTATTTCAACACAGCGGAGGACTGTGTGGTGATGATCTGGCACGAGAATGGCCAGTGGAATGACGTGCCCTGTAACTATCACCTACCCTTCACCTGCAAGAAAGGAACAAGTAAGGAAAGAGCTGCAGTGGCGAAGCAAGGCCTCGGCACACCCATATAG

Function

GO: NA

KEGG:

id description
K06792 AGC1, CSPG1; aggrecan 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007638 True 4080 mRNA 0.53 16 24449322 24461405

Neighbor

gene id symbol gene type direction distance location
AMCG00007636 map1a,LOC106584644 coding upstream 99375 24336561 ~ 24349947 (+)
AMCG00007632 tubgcp4,LOC107695351 coding upstream 187423 24256146 ~ 24261899 (+)
AMCG00007633 LOC106526729,LOC108249217,LOC107091076,LOC102219664 coding upstream 218737 24229522 ~ 24230585 (+)
AMCG00007622 serinc4 coding upstream 371974 24056196 ~ 24077348 (+)
AMCG00007618 mfap1 coding upstream 397495 24048234 ~ 24051827 (+)
AMCG00007641 LOC107733946,LOC107685211,LOC108428500,LOC107737001,LOC103353203,LOC107662289 coding downstream 61060 24522465 ~ 24536808 (+)
AMCG00007639 NA coding downstream 111481 24572886 ~ 24574030 (+)
AMCG00007650 NA coding downstream 117726 24579131 ~ 24586370 (+)
AMCG00007649 NA coding downstream 131891 24593296 ~ 24620644 (+)
AMCG00007653 LOC106562248,LOC105016086,LOC106587394 coding downstream 233117 24694522 ~ 24704573 (+)
G25148 cdkn2aip,LOC107757748,LOC107695352,LOC107730231,LOC107596431,LOC107701282 non-coding upstream 193409 24254790 ~ 24255913 (+)
G25138 NA non-coding upstream 220412 24228636 ~ 24228910 (+)
G25134 NA non-coding upstream 235878 24211682 ~ 24213444 (+)
G25103 NA non-coding upstream 295474 24150343 ~ 24153848 (+)
G25084 NA non-coding upstream 362018 24085407 ~ 24087304 (+)
G25197 LOC105908101 non-coding downstream 9634 24471039 ~ 24473147 (+)
G25203 LOC105015055 non-coding downstream 22881 24484286 ~ 24490748 (+)
G25209 NA non-coding downstream 92863 24554268 ~ 24564852 (+)
G25300 NA non-coding downstream 355937 24817342 ~ 24861868 (+)
G25303 NA non-coding downstream 417960 24879365 ~ 24911371 (+)
AMCG00007631 NA other upstream 254841 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 779243 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 1255801 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 1309801 23133811 ~ 23139521 (+)
G24606 NA other upstream 2166364 22281700 ~ 22282958 (+)
AMCG00007640 NA other downstream 15082 24476487 ~ 24499650 (+)
G25822 NA other downstream 3622417 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 3977239 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 4220766 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 4438653 28900058 ~ 28911566 (+)

Expression


Co-expression Network