AMCG00007640


Basic Information

Item Value
gene id AMCG00007640
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24476487 ~ 24499650 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007640
ATGCTCAAAGTTCTCGGAGTATTAACCTCCTATCTGTCTCTGTTCTTTTCAGGAGATTACTGTGAGGTGAATCACTGTTTAAATGGAGGGACCTGTGTGACGGGGGTTGGTGACACCCCCTACTTTTGCATCTGTTCTGAAGGCTTCACTGGAGATGTGTGCAATGCCACCGAGACAGGCCCGTGCCAGCCAAACCCCTGCCACAACAACGCGCCCTGTGAAGTCATTGCGCACTCGCGGCGCGGGGATGTGTTCAGTGAGTACGTCTGCAAGTGTCCTGAGGGCTTCACTGGAGTGCACTGCCAGAACATCAATGAGCATGTCCTGTTTTCTGTCGTTTGA
>TU31603
GTTTTCTTCCAGACAGGAGTATCCAGGGACCGGGTGCCATTTGCTGTTCGAATCATGAGTGATGCCTGGGTGCTGTGGGAGGTTCTTCCTTTCAGGTTCTCGGAGTATTAACCTCCTATCTGTCTCTGTTCTTTTCAGGAGATTACTGTGAGGTGAATCACTGTTTAAATGGAGGGACCTGTGTGACGGGGGTTGGTGACACCCCCTACTTTTGCATCTGTTCTGAAGGCTTCACTGGAGATGTGTGCAATGCCACCGAGACAGGCCCGTGCCAGCCAAACCCCTGCCACAACAACGCGCCCTGTGAAGTCATTGCGCACTCGCGGCGCGGGGATGTGTTCAGTGAGTACGTCTGCAAGTGTCCTGAGGGCTTCACTGGAGTGCACTGCCAGAACAGTAAGGATGGTCTTTTTtatgtgcatcatagatttccATCAGgggatttaattaactttttaatcGCTCTCATGTTTGTAGTGCCATTCATCAGGTCATCGAGATTGTGCAAGACTGCACATCCGCAATTATTAAAACACTC
>TU31604
GCAATTGACAGTTCTTCCCAACGTAGGGTGATGGGCATTTGCACGTAAAATCTCCATCCAGATCGCGACAGGTTCCGCCATTCTTACAGGGTTGCCCTGCACACTCGTTCACATTGTTCTGAAGGCTTCACTGGAGATGTGTGCAATGCCACCGAGACAGGCCCGTGCCAGCCAAACCCCTGCCACAACAACGCGCCCTGTGAAGTCATTGCGCACTCGCGGCGCGGGGATGTGTTCAGTGAGTACGTCTGCAAGTGTCCTGAGGGCTTCACTGGAGTGCACTGCCAGAACAGTAAGGATGGTCTTTTTtatgtgcatcatagatttccATCAGgggatttaattaactttttaatcGCTCTCATGTTTGTAGTGCCATTCATCAGGTCATCGAGATTGTGCAAGACTGCACATCCGCAATTATTAAAACACTC
>TU31605
GTGAATGGGAATTACTGTGAGGTGAATCACTGTTTAAATGGAGGGACCTGTGTGACGGGGGTTGGTGACACCCCCTACTTTTGCATCTGTTCTGAAGGCTTCACTGGAGATGTGTGCAATGCCACCGAGACAGGCCCGTGCCAGCCAAACCCCTGCCACAACAACGCGCCCTGTGAAGTCATTGCGCACTCGCGGCGCGGGGATGTGTTCAGTGAGTACGTCTGCAAGTGTCCTGAGGGCTTCACTGGAGTGCACTGCCAGAACAGTAAGGATGGTCTTTTTtatgtgcatcatagatttccATCAGgggatttaattaactttttaatcGCTCTCATGTTTGTAGTGCCATTCATCAGGTCATCGAGATTGTGCAAGACTGCACATCCGCAATTATTAAAACACTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007640 False 342 mRNA 0.52 4 24491902 24499650
TU31603 True 538 lncRNA 0.49 2 24498934 24499589
TU31604 False 434 lncRNA 0.50 3 24491000 24499589
TU31605 False 407 lncRNA 0.49 3 24476487 24499589

Neighbor

gene id symbol gene type direction distance location
AMCG00007638 NA coding upstream 15082 24449322 ~ 24461405 (+)
AMCG00007636 map1a,LOC106584644 coding upstream 126540 24336561 ~ 24349947 (+)
AMCG00007632 tubgcp4,LOC107695351 coding upstream 214588 24256146 ~ 24261899 (+)
AMCG00007633 LOC106526729,LOC108249217,LOC107091076,LOC102219664 coding upstream 245902 24229522 ~ 24230585 (+)
AMCG00007622 serinc4 coding upstream 399139 24056196 ~ 24077348 (+)
AMCG00007641 LOC107733946,LOC107685211,LOC108428500,LOC107737001,LOC103353203,LOC107662289 coding downstream 22815 24522465 ~ 24536808 (+)
AMCG00007639 NA coding downstream 73236 24572886 ~ 24574030 (+)
AMCG00007650 NA coding downstream 79481 24579131 ~ 24586370 (+)
AMCG00007649 NA coding downstream 93646 24593296 ~ 24620644 (+)
AMCG00007653 LOC106562248,LOC105016086,LOC106587394 coding downstream 194872 24694522 ~ 24704573 (+)
G25197 LOC105908101 non-coding upstream 3340 24471039 ~ 24473147 (+)
G25196 NA non-coding upstream 6720 24441297 ~ 24469767 (+)
G25148 cdkn2aip,LOC107757748,LOC107695352,LOC107730231,LOC107596431,LOC107701282 non-coding upstream 220574 24254790 ~ 24255913 (+)
G25138 NA non-coding upstream 247577 24228636 ~ 24228910 (+)
G25134 NA non-coding upstream 263043 24211682 ~ 24213444 (+)
G25209 NA non-coding downstream 54618 24554268 ~ 24564852 (+)
G25300 NA non-coding downstream 317692 24817342 ~ 24861868 (+)
G25303 NA non-coding downstream 379715 24879365 ~ 24911371 (+)
G25302 NA non-coding downstream 434829 24934479 ~ 24941580 (+)
G25367 NA non-coding downstream 453475 24953125 ~ 24953328 (+)
AMCG00007631 NA other upstream 282006 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 806408 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 1282966 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 1336966 23133811 ~ 23139521 (+)
G24606 NA other upstream 2193529 22281700 ~ 22282958 (+)
G25822 NA other downstream 3584172 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 3938994 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 4182521 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 4400408 28900058 ~ 28911566 (+)
AMCG00007769 acsbg1 other downstream 4503445 29003095 ~ 29006379 (+)

Expression


Co-expression Network