AMCG00007642


Basic Information

Item Value
gene id AMCG00007642
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24559055 ~ 24562456 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007642
ACACCTAACGTGCCCATCGGAGAAGGAATGCCTGGTGTTTGTGGATTAGCAGGCTCTTCAATGAAGGGGGATAGAACTTCACCTGTTAACCCCTGGGGCCCTCTGAACCCTCCCAGAGGCACAGTCTCTGGTGCCACACCTCAGTCTCAGGTGCTGTGCCAAAGCCCTGGATGCCACGGGCCAGTGGGGAAGCCAGGCCTCAAGACGAGACATTTGCGCAAGAGGCAGCGCCTACTGGAGAGGAGTGCTGTGCTGGAGAAGGCTGGGGTTCTCAAGAGGAACAGCAGCCACGAAAACAAAGACCAGGGTAGTAGAGGCGGCAGTGTCTGTTCCAGCGGGGCCAGTGGAGAGCTGTCAGGGTCAGATCAGCTCTCTGTCAAGCCAGGGACAGACCTTTTGGCAGGCAGTGGCAGGAAACACAGCCCTAacatggagaaagagagaacacTGCCCCTAGCTGGTGATAAATGGGAGGGCGACAGCGGGTTCTCCTCAGAGGCCAGCCCCACTGCCAGTGGCCGCAGCTCTCCCTGCGCCTCGCCCTGCTTCGGCCCGTCCAAACTGGTGGCCCTGGATTGTGAGATGGTGGGCACGGGCCCAAAAGGCCGCTGCAGCGAGGTGGCCCGCTGCAGCATTGTGGGTTACTATGGAGACGTCCTCTATGACAAGTACATCCAGCCCCTGCAGCCTGTGACGAACTACCGCACTCGCTGGAGCGGCATCCGCAGACATCACCTGCTACATGCCATACCTTTCAAAGAGGCGCAGAGAGAGATCTTAAAGATGTTGAAAGGGAAGATAGTGGTTGGCCATGCCTTGCACAATGATTTCTGGACTCTGAGCTACTTCCACCCTCGTCACATGACCAGAGACACCAGCCACCAGCCTCTGCTCAGACAACGAGCCAGCCTTCCTACCAAGGACAATGTTTCTCTGAAGAACCTTGCCAAGAAGCTCCTTAAGAGGGATATCCAGGTGGGCAGAGCTGGACACAGCTCAGTAGAAGACGCCATGGCTGCTATGGATCTGTACAGATTGGTGGAAGCGGAGTGGGAACTCCAAAACCAGGCCAAGCTGTCAGTCACAGACCTTACCCCCACCCCTGAGCCTATCTCCTCCCCCAGCCACTACATGCAGGACCAGTATTGGCCAGAGGACCTCAGTGAAGACTCCAAGTGAAATGTGGAGCATAGTTTTGGATGGAAGAATTGGTATTTATTCGCAGATCTGATCGTTTTGATATCTGTGGGATATCTACCTCTACTCTGAGCAGTGTGCTTCTCCCATAGTGTGTGTGGCATTAGGATCACGGTGGCCTAATGAGTTCTAGTGGTGTTGTACTTGAATCAGTGTCTGGggacactttattattattcttttattatCACAAGTACTGAATTGTAATGGCATTTTAACTTTGGACGTTATAAAGTAGGTCAAGCTAGGCTACCTGTAGTAAAtactaaaaatatttatatattaaaataatttccttgaGAGCTGCCCCTTTATGTAAATGGTGCATACAATTTAAGGACCATAAGGCAATTCATgacaattcatgtttttactgCAGTATGGTgcagtattttgaaaacaaaccgCAAGATCGAATCGGTGATATGCAGTGTAAGTTATTGTTATAACAGGTTTTGAGTTCCTCTTGTTTTATTGATCTTATTGCAGAGGTTTGAAGTGTAGCTCTTAACAGAGTAATGTGATCAAGGTGTAAATATTTTCCAACTCgctgtattaaaaatattgagGTCCACCACGATCCTGGTATCTGCAGCAAGGAAGAATCCCTATGATTTTGGTGCAACCAAAAGCCATCTTCAAAATAAGACAAGTGAACTTTAAATAATTGCCTTACGATCTCTTCAGCTTCTCCTGTTGCTCGGAATGGTTTTATGTCCAAATAGCCTTAGTGCTGCAGGACTGTATTTCATACagatttaaattagtttattgcAATCTTGCTGATTGGTTTGTTAATCCTTCCATCAAGCATTTGTAAAGTATTAAGAGTTCCATTAAGGACTGCTTTTATCCCACAACTTCTTCAGATAGGATATTCCAGGAGGCCCTGCTGGCAGATTTCACTGTACAATACTGTTGCATTTGACAGTGAAAAGATTAACTgcaagtaattatttttaagtgttatggccttaaaatgactttaaaaaagTCACGTTCTACTGACCTCATCCGCTCCCAATCTGTATCTCGGAGTACTCTGTGTGGAGGAGGGTTGTGTCCTTGGTCTCTGCTATTTCCAATCAGTCGCACAATGATGAGAATCTCCCAACATGCAGCTCTTGGTGAAGGGGGATTGTGAAACTCGAACTGTGGTCTAGGAAGATCACATCTGTCCTTTGTGTGATGTGGGTtctgtgaaaatgcattgttgttCACATAAACAGTGCCTAGTCCATGGTACTGCAGTCCTAAACTGAAACGCTTGGTCCTGCTTGACTTGTGCAGGATGTACTGAGATGGACAgaaatgttctctctctccatgtctgTGTCTGGGACTGATCCCACTGTTCAGTCTGCAGTGCACTGAGATAATGGTTGAACAGGACTGAATTGCCAAGTAACTTATTCATGTctaatgaaattaaaagtttaacTTATTTACA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG:

id description
K18340 AEN, ISG20L1; apoptosis-enhancing nuclease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007642 True 2647 mRNA 0.47 3 24559055 24562456

Neighbor

gene id symbol gene type direction distance location
AMCG00007647 rlbp1 coding downstream 8831 24546532 ~ 24550224 (-)
AMCG00007645 NA coding downstream 63846 24484012 ~ 24495209 (-)
AMCG00007643 NA coding downstream 79219 24471035 ~ 24479836 (-)
AMCG00007648 NA coding downstream 94708 24463727 ~ 24464347 (-)
AMCG00007644 ppip5k1,LOC105015023 coding downstream 155933 24368631 ~ 24403122 (-)
AMCG00007646 pdia3,LOC107716732,LOC107753598,LOC107696263,LOC107661453 coding upstream 1339 24563795 ~ 24570297 (-)
AMCG00007652 ckmt1,LOC108418758,LOC105913433,LOC106584654,LOC105028550,LOC107661454,LOC107554962,LOC107753597 coding upstream 52044 24614500 ~ 24624473 (-)
AMCG00007651 NA coding upstream 67050 24629506 ~ 24645364 (-)
AMCG00007656 man2a2 coding upstream 199462 24761918 ~ 24779617 (-)
AMCG00007662 cib1 coding upstream 237384 24799840 ~ 24802378 (-)
G25248 NA non-coding downstream 16897 24498365 ~ 24542158 (-)
G25239 NA non-coding downstream 51236 24433080 ~ 24507819 (-)
G25177 NA non-coding downstream 190682 24368169 ~ 24368373 (-)
G25176 NA non-coding downstream 204745 24350030 ~ 24354310 (-)
G25175 NA non-coding downstream 211636 24347099 ~ 24347419 (-)
G25375 NA non-coding upstream 419478 24981934 ~ 24982139 (-)
G25387 NA non-coding upstream 426389 24988845 ~ 24989054 (-)
G25415 LOC108275329,LOC103046663,LOC108436939,LOC105912564,LOC107696286,LOC103375935,LOC106584709,LOC104942717,LOC107753195 non-coding upstream 645318 25207774 ~ 25247379 (-)
G25421 NA non-coding upstream 690260 25252716 ~ 25256361 (-)
G25446 NA non-coding upstream 889307 25451763 ~ 25452022 (-)
AMCG00007637 NA other downstream 277491 24262690 ~ 24281564 (-)
G25026 NA other downstream 586390 23971671 ~ 23972665 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other downstream 1138752 23406928 ~ 23420303 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other downstream 1982601 22561496 ~ 22576454 (-)
AMCG00007565 gatm other downstream 2200609 22340599 ~ 22358446 (-)
G25422 NA other upstream 701876 25264332 ~ 25264951 (-)
AMCG00007684 shf,LOC108430988 other upstream 1068336 25630792 ~ 25631592 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other upstream 1491308 26053764 ~ 26070848 (-)
AMCG00007704 NA other upstream 2795275 27357731 ~ 27370519 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other upstream 4332237 28894693 ~ 28921123 (-)

Expression


Co-expression Network