AMCG00007643


Basic Information

Item Value
gene id AMCG00007643
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24471035 ~ 24479836 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007643
AGTAAAGCGTGCTCACAGCCAGAGAGGAGCAAGAGGAGCCAGGATAACTGGAGTCACTGGACGCAGCAACTGCAAGTTACTCCACTACACAACTGTATACATCTCTCCCAGACCTGATTGGACCTGAGCCCTCACTCTCACATaagcaggcagacagacacagtggATACAGACTCAAGCTGTCACTATGTTGACACTGCCTCTACTGGCCATGCTTTTGCAGCTTCTCCAGGCCTGCCACGCCGCTCCCTACTCCAATGGCTTCTTCTACCATGACATCATGAATGGCAATGGCAACGGGGAAATTTACTTTAATGGTGTTCGTCTTCATGTGGAGACCCAGGAAAAACCAATCTTTGCTGTGCGCAGCAGTAATGTGACACTGCCCTGCCACTATCACTACAAGCCCCAGTTGAACACCCCACGCAGGACACGGGTGAAGTGGTCCCGTCTGCCGGTCAATGGCGGCCAGGAGACAGATGTGCTGGTGGCCATCGGCCTGCGCCACCGCAGCTATGGGGAGTTCAAGGGTCGGGTGCACCTGCGGCAGGACACTCCGGGGGAGGTGTCTCTGGTCATCTCCGACCTGCACCTCAATGACTCCGGCCGCTATCGTTGCGAGGTCATTGACGGGTTGGAGGATGAGAGTGCTGTtgtggagctggagctgagagGGGTGGTGTTCCCCTACCAGCCTGCGGGTGGCCGCTACCAGCTGAATTTTGGGGCAGCCCAGCACGCCTGTGAGGAGCAAGATGCAGCCCTGGCCAACTTTGAGCAGCTCTTCTCGGCCTGGGAGGAGGGGCTGGACTGGTGCAATGCAGGCTGGCTTGCTGATGGGACAGTACAGTACCCCATCACCCAGTCACGTGAGCCCTGCGGAGGTCTGGGCCTGGCCCCGGGGCTTCGCAGCTATGGGTTGCGGCACCGCCACTTGCACCTCTACGACGCCTTTTGCTTCTCATCCTCCCTGCGTGGCAAGGTGTATTTCCTGCAACACCCCCACAAGCTGAACTTCACAGAGGCTGTGAAGGCTTGTAAGGAGGACAGGGCTGAGATCGCTCGGGTGGGGCAGCTCTACGCAGCCTGGAAGTTCCTCGGACTAGACCGTTGTGATGCAGGCTGGCTGGCTGATGGGAGTCTGCGCTACCCCATCATCAAACCACGGCCCAACTGCGGCCCTGATGAGCCCGGTGTGCGCAGCTTCGGCTTCCCAGCGGAGCACCACAGACATGGCGTCTACTGCTACCGTGCTAGATAGACCCTGCACATAAACCCCGACTGACATTCGTCCACTGCCCGAGTCTCGCTCTGTCTCCCTGGCTCTCTTGTCTTGTCTTCCTTTCTTTACAATCTCTCCACATTAATAAGCATATGTGACAAGGTTGTTACATGGATATCAACCGCTGGGCTCTTGAGGTCTCCGGTGCCTTGGGCCTGGTGGTGGCTCTGTGTGGCTTGGGCACTGAGAGGATCACATATGCTCCTCATCCCTTAGCTGTGCTCTTCTCTTCCCCCATTGGACAgtatctccttctccctctgcGATTCTCCCATTTTTCTGTTCCCCTTCTTATTCCCTGCTGTCTTTTCTCATGCCTTTCCTTGTCTCTCTCCTGTCATTTTCCATGTGTTCCCCCTCTTATTACCCTGACAGTCTCACTCTGCTGATTCAGTCCAGACAGtcctgacatttttcaaataaatgttccaCTCCAGTGAGCTCATGGTGGCTAAGAGATGCTAATAGATACAGCAGAACAGCCAGACTATTGACTTTCCCTCCTTGTTTATCTATTACTGAATGAAACACAATACATGTCTACTAACAAGGTTGAGGTAGAGTGATTTAGTacagtgaaacaaattaaatagtttgGCAGTTGAACCCAtctttattactattatgactttctattttttatagttattattcatgtttttattatttatgcttgaattgtgttttaaatcttattttccATTATGCTCAAagcaaagtaatttaatttggttttcaCTGTGATGAAATGAAACTTGAGGACTTGGCAGAATGGTTTGGTTTAAGGTCATCATTACACATAGCACACACTTGGTTTTGTTCTGCTTTCAGATTTTTGCAGAATTGAAACTTTTATCATTTATCTCTCACTGGATATTAAGCCTTTTTTTATTAACCCAGGTGGTGGTCATTTTTTTGTTAGgccaaatattaaaataagagtaataatagtaaatagtagtaaataaattatatctcagaaaatacattgttgAGATGTATTGCACTTGACCTTACACAGTCTTCTGAATGCACTCAAATCTTCACTGAAGCTGCTCTTAATATCATCTCATGTCAAGTTTTCAAGGATGAATAGATCATCCAAAAAGCAAAAAGTGCCCTGCAGTTTTATGTTTCGATTGATGAACTGTATAAGAACAACAGCAAGCAGCTGGATGTAACCAGAATACTGACTAACCATGATTGTTGCTGTGATCCCAGTGCTTTAATGGCTGTGCTAAATGTCAATAGAAAATGTGCTGGGGCTTCCGCTATTCTACAGAATTGCTCTGTCATTTAACAATGCATCTACAGGAATGTgattttgtgttgcatttatattagaAGAATGTCACATCTTCCAGCATGTGTTCCATCACCTGCTCCCCACATCACCTTAGACACACGCAAACAACACAAGTCCGAGGAACATTTTCTCAGCTCTTTTAATACAACACAGggctatatatatatatatatatatggcatgTGCACAATGTCTGATGTATAATTTCTGCTCCTAGTGAAACAGGAGTAATATTACAGCTTTGTGTAATGGTAACGGTGTTCACTGATGCTTGTGTGTTACTGAGACACTCGTCTTCAtctgtgtaaatatgtacaaaaaaaatacaaatcctgATGTTTCACTTACAATATCTTATTACTTTAATTGAATCCTCCACTTCTAtattcttttgtttgtattctgGTATTTAGCTGAACGTCTGTtcgctttaaaaataaataaagtattttatatgtttttataaaactgaaagccgcaa

Function

GO: NA

KEGG:

id description
K06852 HAPLN3; hyaluronan and proteoglycan link protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007643 True 3069 mRNA 0.46 6 24471035 24479836

Neighbor

gene id symbol gene type direction distance location
AMCG00007648 NA coding downstream 6688 24463727 ~ 24464347 (-)
AMCG00007644 ppip5k1,LOC105015023 coding downstream 67913 24368631 ~ 24403122 (-)
AMCG00007634 NA coding downstream 214994 24251466 ~ 24256041 (-)
AMCG00007635 iqgap1,LOC106562619,LOC107730269 coding downstream 284145 24150344 ~ 24186890 (-)
AMCG00007630 crtc3,LOC107701275,LOC107695354,LOC107757665,LOC107596420 coding downstream 323014 24114555 ~ 24148021 (-)
AMCG00007645 NA coding upstream 4176 24484012 ~ 24495209 (-)
AMCG00007647 rlbp1 coding upstream 66696 24546532 ~ 24550224 (-)
AMCG00007642 NA coding upstream 79219 24559055 ~ 24562456 (-)
AMCG00007646 pdia3,LOC107716732,LOC107753598,LOC107696263,LOC107661453 coding upstream 83959 24563795 ~ 24570297 (-)
AMCG00007652 ckmt1,LOC108418758,LOC105913433,LOC106584654,LOC105028550,LOC107661454,LOC107554962,LOC107753597 coding upstream 134664 24614500 ~ 24624473 (-)
G25177 NA non-coding downstream 102662 24368169 ~ 24368373 (-)
G25176 NA non-coding downstream 116725 24350030 ~ 24354310 (-)
G25175 NA non-coding downstream 123616 24347099 ~ 24347419 (-)
G25079 mfap1 non-coding downstream 420599 24050148 ~ 24050436 (-)
G25078 NA non-coding downstream 420962 24049815 ~ 24050073 (-)
G25248 NA non-coding upstream 18529 24498365 ~ 24542158 (-)
G25375 NA non-coding upstream 502098 24981934 ~ 24982139 (-)
G25387 NA non-coding upstream 509009 24988845 ~ 24989054 (-)
G25415 LOC108275329,LOC103046663,LOC108436939,LOC105912564,LOC107696286,LOC103375935,LOC106584709,LOC104942717,LOC107753195 non-coding upstream 727938 25207774 ~ 25247379 (-)
G25421 NA non-coding upstream 772880 25252716 ~ 25256361 (-)
AMCG00007637 NA other downstream 189471 24262690 ~ 24281564 (-)
G25026 NA other downstream 498370 23971671 ~ 23972665 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other downstream 1050732 23406928 ~ 23420303 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other downstream 1894581 22561496 ~ 22576454 (-)
AMCG00007565 gatm other downstream 2112589 22340599 ~ 22358446 (-)
G25422 NA other upstream 784496 25264332 ~ 25264951 (-)
AMCG00007684 shf,LOC108430988 other upstream 1150956 25630792 ~ 25631592 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other upstream 1573928 26053764 ~ 26070848 (-)
AMCG00007704 NA other upstream 2877895 27357731 ~ 27370519 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other upstream 4414857 28894693 ~ 28921123 (-)

Expression


Co-expression Network