AMCG00007646 (pdia3,LOC107716732,LOC107753598,LOC107696263,LOC107661453)


Basic Information

Item Value
gene id AMCG00007646
gene name pdia3,LOC107716732,LOC107753598,LOC107696263,LOC107661453
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24563795 ~ 24570297 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007646
TTGCGAAAATCCTGCCCTCTCTTATTTGAGCATTGTTTGTAGCGCTGGGCCTAGCCAGGGTAGAAGTCTCTTCTTGCACTGTCCGACCTACGCAGGGGTGTGCACATCGGGGGCGATTTTTGctatattctatattttttaatctacttCCATAGACCCACAGAATAACACCCAGCaatgtttaaattgcttttcttgGCTTTTCTCGCCGGGGCTGCAAGGGCCAGTGATGTGCTAGAGTTCACGGATGACGACTTTGACAGCAGAATTGTAGAGCATGACATGATTCTGGTGGAGTTTTTCGCACCCTGGTGTGGCCACTGTAAACGGCTGGCCCCGGAGTACGAGGCTGCTGCCACACGGCTCAAAGGCATTGTCTCGCTGGCAAAGGTTGACTGCACAGCAAATTCCAATGTGTGTAACAAGTTTGGGGTCAGTGGTTACCCCACTCTCAAGATCTTCAGGGATGGAGAGGATGCTGGTGCATATGATGGTCCTCGCACTGCAGATGGGATTGTGAGCCATTTGAAGAAGCAGGCAGGCCCTGCCTCTGTGGAGATCAAGACTGCAGCTGAGTTGGAGAAGTACATTGGAGACCGGGATGCCAGCGTTGTTGGATTCTTTGCTGATGGGAGCAGCATGTCTCAGACAGAGTTCCTGAAGTCTGCCAGTGCCCTGCGAGAGTCGTACCGCTTCGCTCACACAAACTctgaggagctgctgcagaaacACGCCGTCGAGGGAGAAGGAATCATTCTCTTCCGGCCACCACGTCTGAGCAACAAGTTTGAGGAGGCCAGTGTGAAGTTCAGTGAGGACAAGTATACTAGCAGCAAGATCAAGAAGTTCATCCAGGACAACATCTTTGGAATATGCCCCCACATGACGGAGGACAACAAGGACCAGCTGAAGGGAAAGGACTTGCTGGTGGCTTACTTTGATGTTGATTATGAGAAGAACCCCAAAGGCTCCAACTATTGGAGAAACAGGGTAATGAAGGTGGCCAAGAGCTTCCTGGACCAAGGAAAGACATTGAGCTTCGCTGTGGCTAACAGGAACTCCTTCAACCATGATGTGTCTGAGCTTGGACTGGATGCCAGCAGTGGAGAACTCCCAGTTGTGGGCATTCGAACTGCCAATGGTGACAAATATGTCATGCAGGAAGAATTTTCGCGTGATGGTAAAGCACTGGAGCGATTCCTGCAGGATTACTTTGATGGCAAACTGAAACGTTACCTCAAGTCTGAGCCAATCCCTGAGAACAATGATGGGCCAGTCAAGGTGTTGGTGGCAGAGAACTTTGACGAAATTGTCAATGACGATGACAAAGATGTGCTGATTGAGTTCTATGCACCCTGGTGTGGACATTGCAAGAGCCTTGAGCCCAAATACAAGGAACTTGGCGAGAAGCTGGCTGATGATCCCAACATTGTCATTGCCAAGATGGATGCCACTGCCAATGACGTGCCCTCTCCATATGAAGTCAGAGGATTCCCAACCATTTATTTCTCCCCTGCTGGGAAAAAGCAGAGCCCGAAGAAATATGAGGGAGGACGTGAAGTGAACGACTTCATCGACTATCTGAAGAAAGAGGCATCAAATCCCGTAGTGGTCCAAGAAGATGAGAAGAAacccaagaagaagaagaaatctgAATTGTAAACCGTGGAGTAGCGAATCCATCAAAGGAAGTGTAAAtcggaatatttttttttaaatgaagtccAAAATGTAGAGTAATGCAGAACGACCTGACCCAGGTGATTATGTACCGATCTGGGACAAGCTGCTCTGACAACACCGAGGAAGGTCGTGTGGCAAGAAGCTCTGCCTAATGGACAGAAGGGGACaattcttttcctttttttttctttttttttcttgtttcactCCTCCTGTCCCTTCGTTAGATGCACTTACTGATTGAGACCCATTCCAGAaactggctttttttttcccacttctttaaaatgtaatagttcttgggggagggggggatttttttgttttgtaccacagtttgttttttgtacatttggAAGACTTTAAAGTAATAAAGGCCCACAAAACCAATTCCTTTTTGCCTCTTTCAATATGTAAAGATACAAATTGATTTCTTGCTCTTACTATAATTTTACCTTGTCCTTTATACAATAACTTTCAATCTGACTGATTTAATCCTGAAATACAATTGGGTTTGTATGACGTACATTAAATaagttttaagttatttttttcccctttgagtCCACCACTCCCGCCCCCCccaaccttttctttttcttcagtattATTTCTGACTGGGCCTCTAACCATTTTAAAGGTACATGATGGATTCTTTAATGCAGATACTCCACTCTCAAAATATCAGCAACACTTGAAACATGCCTTGTTCCTAGCAAATGTGTTGGTGTCCCCTGGGGTGTGTTATAATGGTCTGTTCCAGGCACATTGTCAACACTGGTGCTTTAGGGTTATCACCTCTTACCACAGGGAAATTGCAGGCATGGCAACGGCAAAATACACCATTACTCTTGCATTAGATTTGCCTAATGATGGATTAGTGTATAAGGGAAAAGCTTGGAGAAGCC

Function

symbol description
pdia3 Predicted to enable protein disulfide isomerase activity. Predicted to be involved in protein folding and response to endoplasmic reticulum stress. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in cell surface and endoplasmic reticulum. Is expressed in several structures, including axis; hatching gland; hypochord; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in autoimmune hepatitis. Orthologous to human PDIA3 (protein disulfide isomerase family A member 3).

NR:

description
PREDICTED: protein disulfide-isomerase A3

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0006662 glycerol ether metabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0015035 protein disulfide oxidoreductase activity molecular_function
GO:0016853 isomerase activity molecular_function

KEGG:

id description
K08056 PDIA3, GRP58; protein disulfide-isomerase A3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007646 True 2591 mRNA 0.46 13 24563795 24570297

Neighbor

gene id symbol gene type direction distance location
AMCG00007642 NA coding downstream 1339 24559055 ~ 24562456 (-)
AMCG00007647 rlbp1 coding downstream 13571 24546532 ~ 24550224 (-)
AMCG00007645 NA coding downstream 68586 24484012 ~ 24495209 (-)
AMCG00007643 NA coding downstream 83959 24471035 ~ 24479836 (-)
AMCG00007648 NA coding downstream 99448 24463727 ~ 24464347 (-)
AMCG00007652 ckmt1,LOC108418758,LOC105913433,LOC106584654,LOC105028550,LOC107661454,LOC107554962,LOC107753597 coding upstream 44203 24614500 ~ 24624473 (-)
AMCG00007651 NA coding upstream 59209 24629506 ~ 24645364 (-)
AMCG00007656 man2a2 coding upstream 191621 24761918 ~ 24779617 (-)
AMCG00007662 cib1 coding upstream 229543 24799840 ~ 24802378 (-)
AMCG00007661 NA coding upstream 235494 24805791 ~ 24810467 (-)
G25248 NA non-coding downstream 21637 24498365 ~ 24542158 (-)
G25239 NA non-coding downstream 55976 24433080 ~ 24507819 (-)
G25177 NA non-coding downstream 195422 24368169 ~ 24368373 (-)
G25176 NA non-coding downstream 209485 24350030 ~ 24354310 (-)
G25175 NA non-coding downstream 216376 24347099 ~ 24347419 (-)
G25375 NA non-coding upstream 411637 24981934 ~ 24982139 (-)
G25387 NA non-coding upstream 418548 24988845 ~ 24989054 (-)
G25415 LOC108275329,LOC103046663,LOC108436939,LOC105912564,LOC107696286,LOC103375935,LOC106584709,LOC104942717,LOC107753195 non-coding upstream 637477 25207774 ~ 25247379 (-)
G25421 NA non-coding upstream 682419 25252716 ~ 25256361 (-)
G25446 NA non-coding upstream 881466 25451763 ~ 25452022 (-)
AMCG00007637 NA other downstream 282231 24262690 ~ 24281564 (-)
G25026 NA other downstream 591130 23971671 ~ 23972665 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other downstream 1143492 23406928 ~ 23420303 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other downstream 1987341 22561496 ~ 22576454 (-)
AMCG00007565 gatm other downstream 2205349 22340599 ~ 22358446 (-)
G25422 NA other upstream 694035 25264332 ~ 25264951 (-)
AMCG00007684 shf,LOC108430988 other upstream 1060495 25630792 ~ 25631592 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other upstream 1483467 26053764 ~ 26070848 (-)
AMCG00007704 NA other upstream 2787434 27357731 ~ 27370519 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other upstream 4324396 28894693 ~ 28921123 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000055_04938635_04945021 PDIA3 coding CI01000055 null 4938272 ~ 4945711 (-)