AMCG00007647 (rlbp1)


Basic Information

Item Value
gene id AMCG00007647
gene name rlbp1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24546532 ~ 24550224 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007647
aCCGGAACTTTCCGAATGGTGTCGGAAGAGGAGCAGGCCCTGCGCGCCAAACTGGAACGCCTCACTGTCAAGGACCATGGGCCCGTGTTTGGGATCTGCGAGAAGCTGCCTGACCATACTGTGCAGAAGGCCAAGGACGAGATGAACGAGACAGATGAGAAGCGCGTGGTGGCGGTGAAGGAGCTGCGGGCGCTGGCCCAGGAAAAGGTGGACGCGGGCGAGGACATGGCCAAGTCTGTGGCCGACCGCATGTTGGACAAGTCTGACTCGATGCTGCTGAGGTTCATCCGCGCTCGCAAATACGACATTGCCCGTGCCTACGATCTCATGAaagGATACGTGCGTTTCCGGGAGCAGTACCCCGAGCTGTTCGAGAACCTGACCCCCGAGGCCGTGCGCAGCACCATAGAAGCTGGATACCCTGGCATTCTGTCCAGCAGGGACAAGTATGGCCGCGTGGTGCTGCTCTTCAACATCGAGAACTGGGACTATGAAGAGATCACCTTTGATGAGatCCTGCGTGCGTACTGCGTGATTCTGGAGAGGCTGCTGGAGAATGAGGAGACGCAGATCAATGGCTTCTGCATCATCGAGAACTTCAAGGGCTTCACCATGCAGCAGGCCTCAGGGATCAAACCCACCGAGCTCAAGAAGATGGTGGACATGCTGCAGGACTCCTTCCCAGCCCGCTTCAAGGCCGTCCACTTCATTCACCAGCCCTGGTACTTCACCACCACCTACAACGTGGTCAAGCCCCTGATGAAGAGCAAGCTGCTGGAGAGGGTGTTTGTACACGGCGATGAATTAGAGAGCTTCTTCAAGGAGATCGACGCTGAAATCCTGCCCTCAGACTTTGACGGCAAGCTTCCCAAGTACGACGGCAAGGCTACTGCAGACAAGCTGTTCGGGCCGCGCAGTGAGTCCGAAGACACGGCTCTCTAA

Function

symbol description
rlbp1 Predicted to enable phosphatidylinositol bisphosphate binding activity. Predicted to be involved in vitamin A metabolic process. Located in centrosome; cytosol; and nucleoplasm. Implicated in Bothnia retinal dystrophy; Newfoundland cone-rod dystrophy; fundus albipunctatus; night blindness; and retinitis pigmentosa.

NR:

description
PREDICTED: retinaldehyde-binding protein 1

GO:

id name namespace
GO:0007634 optokinetic behavior biological_process
GO:0006810 transport biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K19625 RLBP1; retinaldehyde-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007647 True 942 mRNA 0.57 6 24546532 24550224

Neighbor

gene id symbol gene type direction distance location
AMCG00007645 NA coding downstream 51323 24484012 ~ 24495209 (-)
AMCG00007643 NA coding downstream 66696 24471035 ~ 24479836 (-)
AMCG00007648 NA coding downstream 82185 24463727 ~ 24464347 (-)
AMCG00007644 ppip5k1,LOC105015023 coding downstream 143410 24368631 ~ 24403122 (-)
AMCG00007634 NA coding downstream 290491 24251466 ~ 24256041 (-)
AMCG00007642 NA coding upstream 8831 24559055 ~ 24562456 (-)
AMCG00007646 pdia3,LOC107716732,LOC107753598,LOC107696263,LOC107661453 coding upstream 13571 24563795 ~ 24570297 (-)
AMCG00007652 ckmt1,LOC108418758,LOC105913433,LOC106584654,LOC105028550,LOC107661454,LOC107554962,LOC107753597 coding upstream 64276 24614500 ~ 24624473 (-)
AMCG00007651 NA coding upstream 79282 24629506 ~ 24645364 (-)
AMCG00007656 man2a2 coding upstream 211694 24761918 ~ 24779617 (-)
G25248 NA non-coding downstream 4374 24498365 ~ 24542158 (-)
G25239 NA non-coding downstream 38713 24433080 ~ 24507819 (-)
G25177 NA non-coding downstream 178159 24368169 ~ 24368373 (-)
G25176 NA non-coding downstream 192222 24350030 ~ 24354310 (-)
G25175 NA non-coding downstream 199113 24347099 ~ 24347419 (-)
G25375 NA non-coding upstream 431710 24981934 ~ 24982139 (-)
G25387 NA non-coding upstream 438621 24988845 ~ 24989054 (-)
G25415 LOC108275329,LOC103046663,LOC108436939,LOC105912564,LOC107696286,LOC103375935,LOC106584709,LOC104942717,LOC107753195 non-coding upstream 657550 25207774 ~ 25247379 (-)
G25421 NA non-coding upstream 702492 25252716 ~ 25256361 (-)
G25446 NA non-coding upstream 901539 25451763 ~ 25452022 (-)
AMCG00007637 NA other downstream 264968 24262690 ~ 24281564 (-)
G25026 NA other downstream 573867 23971671 ~ 23972665 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other downstream 1126229 23406928 ~ 23420303 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other downstream 1970078 22561496 ~ 22576454 (-)
AMCG00007565 gatm other downstream 2188086 22340599 ~ 22358446 (-)
G25422 NA other upstream 714108 25264332 ~ 25264951 (-)
AMCG00007684 shf,LOC108430988 other upstream 1080568 25630792 ~ 25631592 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other upstream 1503540 26053764 ~ 26070848 (-)
AMCG00007704 NA other upstream 2807507 27357731 ~ 27370519 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other upstream 4344469 28894693 ~ 28921123 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000055_05855621_05860457 RLBP1A, RLBP1, RLBP1B coding CI01000055 null 5855049 ~ 5860927 (+)