AMCG00007648


Basic Information

Item Value
gene id AMCG00007648
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24463727 ~ 24464347 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007648
ATGGCTACCATTCTAGctgttaattttattcccttaCCTCCAGTCTCGTGTGGATCCCCTCCAGAGGTAGAGAATGCCCAGATGTTTGGGAAGAGGAGAGACCGCTATGAAGTGAACTCCATAATCCGGTATCATTGTAACTCTGGCTTCACACAGCGCCACCTGCCTGTTATCCGATGCATGGCAGATGGCCAGTGGGAGCAACCACGCGTGGAGTGTATAGAC

Function

GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007648 True 225 mRNA 0.51 2 24463727 24464347

Neighbor

gene id symbol gene type direction distance location
AMCG00007644 ppip5k1,LOC105015023 coding downstream 60605 24368631 ~ 24403122 (-)
AMCG00007634 NA coding downstream 207686 24251466 ~ 24256041 (-)
AMCG00007635 iqgap1,LOC106562619,LOC107730269 coding downstream 276837 24150344 ~ 24186890 (-)
AMCG00007630 crtc3,LOC107701275,LOC107695354,LOC107757665,LOC107596420 coding downstream 315706 24114555 ~ 24148021 (-)
AMCG00007629 NA coding downstream 363054 24078152 ~ 24100673 (-)
AMCG00007643 NA coding upstream 6688 24471035 ~ 24479836 (-)
AMCG00007645 NA coding upstream 19665 24484012 ~ 24495209 (-)
AMCG00007647 rlbp1 coding upstream 82185 24546532 ~ 24550224 (-)
AMCG00007642 NA coding upstream 94708 24559055 ~ 24562456 (-)
AMCG00007646 pdia3,LOC107716732,LOC107753598,LOC107696263,LOC107661453 coding upstream 99448 24563795 ~ 24570297 (-)
G25177 NA non-coding downstream 95354 24368169 ~ 24368373 (-)
G25176 NA non-coding downstream 109417 24350030 ~ 24354310 (-)
G25175 NA non-coding downstream 116308 24347099 ~ 24347419 (-)
G25079 mfap1 non-coding downstream 413291 24050148 ~ 24050436 (-)
G25078 NA non-coding downstream 413654 24049815 ~ 24050073 (-)
G25248 NA non-coding upstream 34018 24498365 ~ 24542158 (-)
G25375 NA non-coding upstream 517587 24981934 ~ 24982139 (-)
G25387 NA non-coding upstream 524498 24988845 ~ 24989054 (-)
G25415 LOC108275329,LOC103046663,LOC108436939,LOC105912564,LOC107696286,LOC103375935,LOC106584709,LOC104942717,LOC107753195 non-coding upstream 743427 25207774 ~ 25247379 (-)
G25421 NA non-coding upstream 788369 25252716 ~ 25256361 (-)
AMCG00007637 NA other downstream 182163 24262690 ~ 24281564 (-)
G25026 NA other downstream 491062 23971671 ~ 23972665 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other downstream 1043424 23406928 ~ 23420303 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other downstream 1887273 22561496 ~ 22576454 (-)
AMCG00007565 gatm other downstream 2105281 22340599 ~ 22358446 (-)
G25422 NA other upstream 799985 25264332 ~ 25264951 (-)
AMCG00007684 shf,LOC108430988 other upstream 1166445 25630792 ~ 25631592 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other upstream 1589417 26053764 ~ 26070848 (-)
AMCG00007704 NA other upstream 2893384 27357731 ~ 27370519 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other upstream 4430346 28894693 ~ 28921123 (-)

Expression


Co-expression Network