AMCG00007649


Basic Information

Item Value
gene id AMCG00007649
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24593296 ~ 24620644 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007649
ATGACTTCGGCGTGTTGCGTGCCGTGCGGCGGACAGCGCTCTCCTGCGGCCGCTCCAGTCCCGCTGCTCCGCGCAGCCTCTGACCCTGCGCTGCGGTTTGTGTTTAAATCCCCGCATGTCATTCCCCGCCCGCAGAGCTCGGGTCGCCGGCCCCACTGCGGGACTCTGACTGCGATGAGGCGGATTGGTGGGCTGGCCTTGGGGGGCTCGGTTAGGAAGCGAGAGGAGTGGCTCCCGACGAGCCTGCTGTACCGCGGCGGAGCAGCGCCTGACTCCCCGCCATGTGACCAGCGTGACCGGCGCCGAGTCGAGCCGAGAGCCGGAGCGGCGAGCGCGGTCCCCTCTGCAagtcctgcaggagctgtttgCGGAGGCAGAGATGTGACATTACGTGGATTGGCCCGAGGCTGGCAGTGTACAGAGAGCGTCTCTGCTCAGAGCAGAATGGCTGTGCTACTCCTGCTGTTGGCGATCCTCTCAGTAAGACTCCCAGCTACAGGAGCAGcaGGCCAGAGGGCAGCGCAGCCAGTGGAGTTGTTGAAGGAGCTGGTATCGCTCTGGCAGAGAAGGGTTGAGGGGGCACCACAGAAAGAGCAGCCCCCCACTGTAAGGACACAAAGGCAGCGGATTCAGACTGTGGTCAGAAACATCATGGGGGGTCTCCAGACATTGGGCTTTCTGCCTAAGAAGGGCATCAGCCTGCCAaatctcctctctccccccagcAAATCTCTGGACAGGAACCGTCTGTCGGGCTTCTTGTATAATATCTCCATGTACCTGCAGGGGGCTGGGGGAGAGCCAGGGGCTGGTCCTTACTCCAATGATCAGGAACAGTTCTGGGAGAATATGCTGTACTCTCTCCTCCAGCCAGAAAGTGGCATGATACTCGAACAGTGGGAGGAGAAAGTTCCCCCCAGACCCAGCTTCAGGATCCGTGACCTCTTCCTGTCCCTACGGGGCAGCCGGCACTGGGATGGGCTGCTGGGGGTCATACAAACTGCCCTGAGCTTTTCTGAGAGGCAGCCACAGAGGCCTTTACTTAGCTTCCTCAGGCAGAACTGGGACACCATCAGTGCCCTGCTGGACACCATCATACAAGCACTTGTTAGTGGAACATATGGGCAAGCTAGTGCAGGTATCCAAGGGTTTATTTGTGTCTTAAAGGGACGTAACGACTGTGCCTTCAACCTGGGCTGgctgcagcagctcctcagCTTTTTGGAGGCACGGAACTGGAAACCAGTTGTCAATTTTCATCCGGGGGGTGTGATTGGGGGTCAGCAAGCTGGGGGACGCCTCAAGCCTTTCAGTATGCTCCCAGGAGCCTTCAAGGAGGAGAATGCATTCCCTAACCAGACGCAGCCCAACTCTGGAGGGCTGGGCTCCATGCAGACGCTCCTCCTTCAGGCTCTGTCAAGGTCCAATAGTGGAGAGAGGGCGGGGCAATCTGTGGAGCCGAGCCCTGCCCTCCTGCAGGGACTGGACGGGCTGCGGCAGGGCCTGTTGCGTAGGGTGGGCAGCACAGTGTACGGCAGCCTGAGGAGGAAGGTGTCCAGGGTGACTGGGGCTCTGCTGGAGGATGTGTCCAGCCTGGTGGGCGTGCCGCATGCAGACCACGAGGGGAAATGCTCAGTGGGCAAGGGAATCAGGCACAACCTCACCTGGAATGCCCAGGCTCTGGGATTCAGTTCCCAGGGCCCTCCCAGCAGACCTCCCTTCTTGTTCTGCCACTCCTCAGTGCAGGTCCAGCACAGAGGTTCTTCAGCTTCACGTAGACCCAGAGACACATCCCTGAATCCAGCGGCACAACTGAtaggaggagaagagagggatGAGACAGAGACTGACTACCCTCCCCCCACAGAGATCCTGGAGGCAGCTTGTAATGAATCCATTCCTGGACTTACAGGGGTGTCAAACTTCACAGTCTTCCTCTACTGTAACCTCTTTGATGGAAACGACGACGCTTTGGACACCGAGGCAGATCACCTGGGGCTGGACCTGCACTCCACCTGCTCTGATGCGGCCTGGTACCTCTCGGCTGCCGAGGAGGATTTCCTGTGGGTGCACGTGTGCAGCGAGTTCTTTGCTCACGAGTTCAATAACACCGTCTGTGCCAACTCCTCCTTCTGGTTGGAACGTGCTCACCAGGCTGCTGTAACCAAGGAGTACCGCATCCTCAATCAGTCCAGCATTGATGACCTTTGTGTGCATCTCTCCAGTGATGCCAGTGGAAGCTCTGCCTCTGAAGCCAGTGAGGATTGCTTGGTGCAACTGGGAGCTGGAGCTCTGAGAGCCAAGGACTTCAGGAGATGTTTTCTACCGAACAACTCGGACCTGATTGCGGCTCTGTGCAGCAATGAGAGCTCAGCCCAGGCAGGGAGCTGGGCGGCGGAGTATTGCTCCAAAGTGCACCACAATGCTTCTCACAGCGACCTCAGGGTGGAGACCTGCAAATACCATAAATGGACACTGGACGCTTTTGGAAATACTTCTCTCCTGGATCTATGTAAGGGTGTTGAGGGGCTGAGGGAGCACATCTGCCACAATGCAACCTTCTACCGGCAACTTGTAGTGGCTTACCCCTGGCTTTTAGACTACTGTGCTGAAGCAGGTGTGAAGCCAGGGGACAGCAAGTGTTTCCTGCAGAAGCTCTTTGACATGCTGCCTGCTCCCTATGACTTCGACACTTCCCAGCTGTGTGTGAACCCCGCCCCCTTCCTCCTGGATGCTCTCTATAGGTTGAGTCAGTGTGAGGGGCGGGGCGATGAGCGTGTGGGCTGGCTCAGGGCGGTGAGCTATGTGCTCCGTGTGCTGGACTTCGTGGTGGGGCTGTCGGCGGGGCTGGAGGAGGGTGAGCGGGAGGTGCGGCAGGGCCTGGGTCAGGCCATCCTGCTCTCCAGTCTCCTAGACAACACCTCCTTCTGGGCCACCCTCCGCCCCGGGGCTTCTCTGAGTGTGCTCCAGACTGTCGGTATCTTTCTCAGGAAGGAGCAGAACCCCTCCCTCAAGGAGGACCTTCTCAGCTGCTTCAGTCCTGTGCTGTGGGACCTCATCCAGAGGGAAGACAACTCCTCAGCCCTGAGAGTACTCTTCCAGGAGTACCTGCAGATGCCACGGGAAAGCATCCGCACTCTGCTGATGTCAGCGGAAAATGAGGCAGTGAAAAGGTTCCTGTCTCACATGCACCAGAGCTGGGACCAACTGCAGGTGGAGACCATTCAGGTGTCTCCAAGGGAGCAGCAGGCCATGGAAACAATGACCTCCGCCTTCATCCACAAGTTCCCTCGCGTCACCCCTGACCTCTTTGTCGACCTCTCCCAGTTCATCCCCTTCATGTCCATATCTGACATCATGAGCTTTCCAGCCTCCCTCTTGGTCAATGACAGTGTGTTGACAGCTATCCGGGTTCACAGCCCTGAGATGAAGTCGCCCCAGAAAAGAGCCTTTGTCAAGAGACTGCTGCAGTCCAATGTCTTCGGTGAGGTCTCGTCATGGCCACCCTACTTCCTCAGCTCCATCTTGCCTCTTTTACCCCACCTGCCCCTCTGCCACTTTCAGCAACTCACCACCCAGCAGCTTAGCCCACTAGTGGAAGTGCTGGGGAACAGCAGCCTAGACACCACTAGGGGGCACCACCTGCTGCGGACAGTGTTCAACAAGAGGAGGAACTTGACCAGCGAGGATGCACTGAGGTTGGGGCTGCTGCTGTGCTACATGAGCGCAGACGACCTGCGTCCTCTCCTGTCGGGCCCACCACTGCCCCGCCCCCTGAGGGACCGCctggcactgtgtgtgtcagagggGCTCACCAGTGGCAGCGGAAGGctctctcACTGGCTGCTCCAGGCTCTCCAGTCCTTGAATGCCAGCACACTGACCCCTGTAGAGCTGCCCCCTCTCCGCGGACTGCTGCCCCAACTCGGAGCATCCTTCCTGCAGCCGCTCTCCCCATCCCAGGTGCTCCACCTTCTGGCTCAACCAGGTGTCCCCAGCTTCCCTCCAGCACAGgCATATCAAATATTAGCTAAAATAACACAGAATATAAAtCTCAGTGTGGAGGGTGTGTGCCAGTTGTGGCCCCTGCTCTCAGGGCTCAGTCCCTCTGCTCTGCGCTCCCTGGTCAGGCCTGTGGTCTCTGGCCCCTCTTCCTGCCACTGCTGGGGCTCCCTGCTGCCTGAGCTGAGCCGGGCCCACGTGGCCATGCTGTATGACTCAATGCAGCAGGCCCTGGGGAATGTGTCAGAGAGCCTATCCCTACAGTCCCGCTGTCTGCTGCCCTCTGTCCCCCTGAAACACCTGATGCTGGAGGGAGATGTGGTCCTGAGAGACATCGCACTGTACAGGAACTTGCCCTGGTCCCACCAGCAGGCCCAGTGGCTTTTCAAGAAGATCcttcaaactgaaaacatcaCAGCAGAAACTGTATTATCCTTGGGCCGCATCGCAGGTGGAATGGACTGTGATTGGCTTAGATTCTGGGCCAATCAATCGGATTTCTCTGAGCTGCTGGGATTGGTCAGTGAGCTACCAGGAGGCATAAGGCCAGCCCTGAGAAAATGTGTCATTGAGGAGCTGCGCAAACAACCAGAAACAGATCTACGCCTTCTGTCCCCGCACTTCTCCCTGGGCCTGCCGCTGAAGATGATGGACAGGCTCCCTAATGCCTCATTTACGGCCATTCTGGAGCACATCAGGCAACACTTCACTGACTTCCTCCGGTTGCCGCCCCACAAACAGAGCGCTCTGGCAGAGAAGGCCCTCTCTGTCCTGGGAATCTCCCAGGAGGCAGAGATCTCGGGGGCATCTCTGGAGCTCCTGGGACCCCTGTTCCCCTTTCTGGACAGGGCAGTGGTGGGACAGGTGGAGCGGGAGGCCCTGCGCCTGCGCTTGGATGAGCTGAAGGGGTACTGCTTTCCCCGGGGCATCCTGCCTGAGATTGCCAGCATCCTGACAGAGAGGGTGAAGGAGATGGAAAATGCCGGCTGGCTGCTCTTTGCCCTCTCCTCTCAGGAGATTGGCACCCTGCCTGTGGAGGTGCTGAGCCCAGACATAGTGGAGCAGGCCCTGGAGAGTTTGTGGCGCTGGCAGGGCAGTGAAGTGGGCCACACCTGTGCCACcccacagggagagagggagaagagggagAAGCTCGTCCACAGGATCATCAGGGGCAACAGTAACGGCAAAAGAGAGCCAGTCCCGAGCTGCGCGGACATCAAGGGTACATTCCCCTCAGCCTGGAGCACGACTCAGCTGGGCCGAATGGGGGAGCAGGATCTGCGGCAGTGTGTGGACACCCTGGGCCGGGACAGTCAGCTCAGCCCAGAGCAGCGCCGAGCACTCTGGACCCGCCTCAAACAACTTTCTGGCCCAGTGAAAGCCATGAGGCCAGAGCAGATCCTGCAGCTGGGCTGTATCGTGACTGAGCTGAGTGAGAGGGAGCTGCAGGATATTGACCTGGCCAACCTGGGGATCCTGGCCCATCTGGGAGCCATGAAAGACTGGAGTCCAAAGAAGATGAGGGCGGCCGTGAATAGCTTCCTGAGGCACAGCCGACTAACACCAGAGGGGCTGGGCCTAACAGAGTTGGCGTCTCTTGGCCACCTGCTCTGCGGACTGAGTCCCCCTGAAATCGGCCGTCTCAACCCCCACACGCTCAGTGTGGCCGCTGTGTTCCTGCGAGAGCTGCACCTGCCCTGCTCGGAGCTGCAGTCTGAAGCACTGGCCTCTCAGCTCATGAGTGCCCAGGCCTTTGGGGGGGCCAGCTCGTGGGGCTCTGAGGTCTTTACTGAGATCGGGACTCTGGCAGCTGGGCTGCCGGACATTGTGCTGTCATCGTTGGTCAGGGAGCAGATAGAAGGCCTGACCCCCACAGCCATTGCCCTCATCCACCCCAGCAAACTGGCCgTGGTGCTGAGTGCGGCCCAGCTGTCCTGGCTGGGCCCTGAGCAGGCGGAGGCACTAACACCAGAGCAGTGGGCTGAGCTGGGCAGCGAGCAGAGGGTGGCCGTGGTCATGGCGCAGTACGAGGGGGAGACGGCCCAGGAGTACAGGGGTATGAACACGTCCGATGGATATACCAAGCTCAGTGTGGCGTTGGACCTCACCTCAGACTTGCCCAGTCGGTCCAGGTTGGAGACGTCGAAGGTGCTGCCCACGGCTGCTGTGTCCACACCCCCTGTGCCTCGCTTCTGGAGACGCAGGTTGTCCAGGATCTTGGGGAAGCGAGGgtcctacagagagagagacgataCTCAGTACACTAACACACAGCGGGCGGTCTCGCAGACGGTTAATGTGCACGCCAGCCCGCAGCCCTGTGCCCAGGTTGGAGGGGCAGCTTACATTGCTATGCTTCATTCAAAAGCGTTTACCAGATTCCACGGGCATCCGGCCAATCACGGGCCATTCCTGCACAGATCTCCACTCAGCCCGTTCAGAGCGTCCGACACCACGCGCTCCACCTCCCGGCGCTCCGCACGTGTGCAGGCAGGGGGCAGGCTGAGCCCACGGATGCTGCGCCCTGTCCGCACACGAGAGGACAGCACGTAG

Function

GO: NA

KEGG:

id description
K24636 STRC; stereocilin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007649 True 6558 mRNA 0.59 32 24593296 24620644

Neighbor

gene id symbol gene type direction distance location
AMCG00007650 NA coding upstream 6926 24579131 ~ 24586370 (+)
AMCG00007639 NA coding upstream 19266 24572886 ~ 24574030 (+)
AMCG00007641 LOC107733946,LOC107685211,LOC108428500,LOC107737001,LOC103353203,LOC107662289 coding upstream 56488 24522465 ~ 24536808 (+)
AMCG00007638 NA coding upstream 131891 24449322 ~ 24461405 (+)
AMCG00007636 map1a,LOC106584644 coding upstream 243349 24336561 ~ 24349947 (+)
AMCG00007653 LOC106562248,LOC105016086,LOC106587394 coding downstream 73878 24694522 ~ 24704573 (+)
AMCG00007654 NA coding downstream 96292 24716936 ~ 24738397 (+)
AMCG00007655 NA coding downstream 122290 24742934 ~ 24761289 (+)
AMCG00007660 NA coding downstream 160713 24781357 ~ 24783125 (+)
AMCG00007657 unc45a coding downstream 164648 24785292 ~ 24793741 (+)
G25209 NA non-coding upstream 28444 24554268 ~ 24564852 (+)
G25203 LOC105015055 non-coding upstream 102548 24484286 ~ 24490748 (+)
G25197 LOC105908101 non-coding upstream 120149 24471039 ~ 24473147 (+)
G25196 NA non-coding upstream 123529 24441297 ~ 24469767 (+)
G25148 cdkn2aip,LOC107757748,LOC107695352,LOC107730231,LOC107596431,LOC107701282 non-coding upstream 337383 24254790 ~ 24255913 (+)
G25300 NA non-coding downstream 196698 24817342 ~ 24861868 (+)
G25303 NA non-coding downstream 258721 24879365 ~ 24911371 (+)
G25302 NA non-coding downstream 313835 24934479 ~ 24941580 (+)
G25367 NA non-coding downstream 332481 24953125 ~ 24953328 (+)
G25405 NA non-coding downstream 695143 25315787 ~ 25321025 (+)
AMCG00007640 NA other upstream 93646 24476487 ~ 24499650 (+)
AMCG00007631 NA other upstream 398815 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 923217 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 1399775 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 1453775 23133811 ~ 23139521 (+)
G25822 NA other downstream 3463178 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 3818000 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 4061527 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 4279414 28900058 ~ 28911566 (+)
AMCG00007769 acsbg1 other downstream 4382451 29003095 ~ 29006379 (+)

Expression


Co-expression Network