AMCG00007650


Basic Information

Item Value
gene id AMCG00007650
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24579131 ~ 24586370 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007650
ATGGTGGCGTCGCCCCAGGAGCCTCCATCCATCCCCAGCCCTcatgaagaggaagagggggcAGTCCAAAAGGCTCTACCTCGGGCTGACATAATCTGccacaaagttattctgagctTGTCCCAACTGGAGCCCTTACAAGAGGATATGAGAGGAAACCCCCAGTACAAACCCAATGATATTCTAGATCAGACTTTGCTCACCAAGCTGATGTTGAAGGAGTCTCAACAGCTCGTGAGGTTTGAGAACGCTCCACAGCAGAACAGCATCATCACCAAGGAGCATCGCAGGTGCAGCCGTCTGAAGAACCAGTGTGCCAAGTACCCACCCCTCAACATGTGGGCACAGTGGGTCCTGGAGAGTAAGATATTCACCAGGGCTATTCTGTTCCTCACCATTCTGAACACCATTGTACTGGGCATTCAGTCAGAGGTGTTTGACAACATGGACCCTAGCCTGGTGATTCTGAAGTTGATACTGAACATCGTGGACTGGAGCATCGTGGCCATCTTCCTGCTGGAGATCCTGCTCAAGTGGATTGATGATTTCTTCATGTTTTGGAAGAATAATTGGAACATCTTTGACTTTATGGTTACTATTCTGTCCATCCTGCCTGAGGTCATCAAGCTCTACCAAGGACAGAATACCTCTGGTCTGGCATTTATGAAGCTCATCCGGATGTGTCGCATCCTCCGCACTCTGAAAATGTTCAGCAAATTCCCAAGGTACAGGGTCCTTGTGCTGGCCATCTCCGCAGGAATCAAGGACCTGTTTTTTATCTTCCTGCTGCTCCTGGTATTTGCATACATCTTTGCTGTCACCGGTATCGTCCTCTTCCAGAGCTACACCGACTCTGACCAGCCTGATCTTGAATACAAGCAGAGCTTCAAGGATATTCCCAACTCCTTAACCACCCTCTTCATAATCTTCACCATGGATCACTGGTACGAATTGATGCTGGACACATGGAAAGTCGCAGAGCTGGACAAGACAATCTCTAGCCTCTACATAATCATCTGGCTGCTAATTAGCTCCTTCATCTTCAAGAACATATTTATGGGGATTATGGTGAACAAATTCCAGGCCATTCGGCAAGACATGTTCCAGGAAATGCAGCAGATTCAGATCCGGCAAAATATAGACCTCTTCAGAGCGGAGAACATCAACAGGCCAGATTGTGTGTCAGCTGATGAGGACCTGTGTTGCCTCACAGACTGGGAGACATACATGGAGGAGTATATACAGGTGATGCAGGAACAAGAGGAAAATGACAATGTGACATGGCCACAGGACTCACTCTTCAAGTACTACGAGTACCTGCAGAAGCTGCAGTACAACCTGGATGAGCGCAACGCGCAGATGATTGTGGGAGGTGAGCGATGA

Function

GO: NA

KEGG:

id description
K16890 CATSPER2; cation channel sperm-associated protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007650 True 1383 mRNA 0.49 10 24579131 24586370

Neighbor

gene id symbol gene type direction distance location
AMCG00007639 NA coding upstream 5101 24572886 ~ 24574030 (+)
AMCG00007641 LOC107733946,LOC107685211,LOC108428500,LOC107737001,LOC103353203,LOC107662289 coding upstream 42323 24522465 ~ 24536808 (+)
AMCG00007638 NA coding upstream 117726 24449322 ~ 24461405 (+)
AMCG00007636 map1a,LOC106584644 coding upstream 229184 24336561 ~ 24349947 (+)
AMCG00007632 tubgcp4,LOC107695351 coding upstream 317232 24256146 ~ 24261899 (+)
AMCG00007649 NA coding downstream 6926 24593296 ~ 24620644 (+)
AMCG00007653 LOC106562248,LOC105016086,LOC106587394 coding downstream 108152 24694522 ~ 24704573 (+)
AMCG00007654 NA coding downstream 130566 24716936 ~ 24738397 (+)
AMCG00007655 NA coding downstream 156564 24742934 ~ 24761289 (+)
AMCG00007660 NA coding downstream 194987 24781357 ~ 24783125 (+)
G25209 NA non-coding upstream 14279 24554268 ~ 24564852 (+)
G25203 LOC105015055 non-coding upstream 88383 24484286 ~ 24490748 (+)
G25197 LOC105908101 non-coding upstream 105984 24471039 ~ 24473147 (+)
G25196 NA non-coding upstream 109364 24441297 ~ 24469767 (+)
G25148 cdkn2aip,LOC107757748,LOC107695352,LOC107730231,LOC107596431,LOC107701282 non-coding upstream 323218 24254790 ~ 24255913 (+)
G25300 NA non-coding downstream 230972 24817342 ~ 24861868 (+)
G25303 NA non-coding downstream 292995 24879365 ~ 24911371 (+)
G25302 NA non-coding downstream 348109 24934479 ~ 24941580 (+)
G25367 NA non-coding downstream 366755 24953125 ~ 24953328 (+)
G25405 NA non-coding downstream 729417 25315787 ~ 25321025 (+)
AMCG00007640 NA other upstream 79481 24476487 ~ 24499650 (+)
AMCG00007631 NA other upstream 384650 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 909052 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 1385610 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 1439610 23133811 ~ 23139521 (+)
G25822 NA other downstream 3497452 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 3852274 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 4095801 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 4313688 28900058 ~ 28911566 (+)
AMCG00007769 acsbg1 other downstream 4416725 29003095 ~ 29006379 (+)

Expression


Co-expression Network