AMCG00007668


Basic Information

Item Value
gene id AMCG00007668
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24966872 ~ 24979337 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007668
AATGAATGCAGAGTCAGAGGAAGAGAGTGAACTGGGAGAGGAGGATGAAGGCCCGTTGAGCCAGGAGGCACAGGGGGAGAGGTTGAGAGATCCTACAGAGGGGGTTCTCAGGGGACCCACCAGAGGAGAAAGGCAGGTGGACTCCAGTAGGGGAGAAAGTGTTGGAGAAAGGAGTGCGGAGCGGAGGAAGGCAAGCAGTgggaaagaaacaaagcaaacgCCAGTCAAGAAAACCAAAGGAGCGAGCAGCTCAGACATacacaagaaaaagaagaggaagaaatcGAGatttctgGGGATAAATCTGACTAACTGCAAGTATGAGAGCGTGAGGAGAGCAGCACAGGCAGTGGGTCTGAGAGAGGTGAGTGAGGACGAGGAATGGATCCTTTACTGGACCGACTTCTCCGTCTCCATGGAGCGGATCATGGACATGAAGAGCTACCAGAGAATTAACCATTTCCCTGGAATGAATGAGATCTGCCGAAAGCATCTGCTGGCTAGAAATATGAACCGGATGCTGAAACTTTTCCCAAAAGACTACGTCATCTTTCCAAAAACCTGGTGCCTGCCTTCAGATTACATTGATTTTCAGGCATATTGTCGGACAAAGAAGAACAAGACGTTCATTTGTAAGCCAGACAGTGGCTGTCAGGGTAAAGGGATCTACATCACGCGCAACCTTCGGGACATCAGCCCCGACGAGCACATCATCTGTCAGAACTACATCTCCAAGTTTGACCTGCGTCTGTACGTGCTTGTGACCTCCTGCGACCCTCTGCGAGTGTTCCTGTACCGGGACGGGCTGATGCGCTTTGCCACCTCCAGATACAGCCCCCCCCACAGCAGGAACCTGGACGATGTTTGCATGCATCTGACGAATTACGCCATCAACAAGCACAATGATAACTTCATCCGAGATGAGGAGATGGGCAGCAAGAGAAAGCTGTCAACATTTAAGTCCTGGTTAGAGCACCATGAATACGATGCAAAGGGACTGTGGAGTGAAATGGAGGACGTGATCATCAAGACCCTGATCTCTGCCCACCCCACCCTGAAGCACAACTACCACACAGGCTTCCCCAATCATCTGGGGCCCAGCTCCTGCTTTGAAATCCTGGGCTTTGACATCCTGCTGGACAGCAAGCTCAAGCCCTGGTTACTAGAGGTGAACCACTCTCCCAGCTTCACCACGGACTCGGCGCTGGACTGCGAGGTGAAGGGGGCCCTGCTCACGGACACGCTGCAGCTACTCAACCTGGGGATCGGTGACAGCCTCCGTGTCCTGGAGGAGGACAAGCGCCGGGCCAAGGAGCGCCTGCTGCAAACACAACAGCCAACCCACACGAGGGAGCACTTCCTTCACACTCAGGCCTCGTGGCTGGCCCAGCTGGAGAAGCACGAACAGGAGCACGGCGGCGGATTTCAAAGAATTTATCCTTCAGCAGACTTTGACAAATACAACAAGTTCTTCCAGCACAGTGGCTCCCTCTTCCAGGAAACAGTGGCCTCTAAAGCCAGGGAGGAGTGTGCCAGGAAGATGCTGGAGGAGCTGCATATGAAGAAGGAGCAGGTCAGACGGCCACCACAGCCAGGGAAGAGGGGCAGCCGGGGGGAGTCCTCTGAGAAAGCCCTCCATCCCAGGAGCTCACGACACCCAGCTCCCTCTGTTAGCTGGAGTGGCGTTTGGTGGGACTCCTACCAGCCCGGGCTGatcatggaggaggaggaggcagagcgGCTGTGTGGCCTGGAGCAGCGGGATGATCTGCTGAGAGGGCTGGGAGTGGTGGAGTTGGTCTGCCGCCTGATGGAGGGAGGAAATGCAAGCAGTGCAGCTCAGCACGTTGCCCGCCACTACCGCCTGGATAGCCGGTGCAGAGGGAGGGGGTCATTGAAACAGCATggcttctctcctcctctgagGGCCCCAGCTCTTACAGCTCCCTCCAGACCCGCTGTTCCTTATCCTGTCTACCTGCAGCCTCTTTCCAGTGGCTTCCCCCGCCCAACTCTGGCCAGCCAGGCCCTGTTGTCAGGCCTAGCCAAGCTGGGCCAGAGGCGCCTGTACAAGCCTTCGCCATGGAGTGGAGAGCGAGATCCCAGTCTGCTGTCTGTAGGAGTGGCCAAGTTGGGCTTTTCCGAGCAGACGGACAGACACCATAGGGGCAGAGGCCAACTGTGTAAGAGCTATGATTCTCAACCCCATCTCCTGCATCTGCCATCTGGCTTTGTGAGGAGGCCGGGTTCCATGGCGGGGTCCGTGTCCTGCTCTGTGGGCCTGTACCGCACCAGACTCGGCCCCcaagccccagccccagccccagccccagcccgaGCCCCAGCCCGCTGCCCTGACCTCTCCATGTTGTCAGCCAGTCTGGAGGAAGTGGAGGCCCCCTTCACAAGtAAATATGCTTTTGACGATAATGATGTGGAGggaaatattgatttt

Function

GO:

id name namespace
GO:0003341 cilium movement biological_process
GO:0018095 protein polyglutamylation biological_process
GO:0035082 axoneme assembly biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005929 cilium cellular_component
GO:0070740 tubulin-glutamic acid ligase activity molecular_function

KEGG:

id description
K16582 TTLL6_13; tubulin polyglutamylase TTLL6/13

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007668 True 2455 mRNA 0.56 15 24966872 24979337

Neighbor

gene id symbol gene type direction distance location
AMCG00007666 NA coding downstream 21076 24934308 ~ 24945796 (-)
AMCG00007661 NA coding downstream 156405 24805791 ~ 24810467 (-)
AMCG00007662 cib1 coding downstream 164494 24799840 ~ 24802378 (-)
AMCG00007656 man2a2 coding downstream 187255 24761918 ~ 24779617 (-)
AMCG00007651 NA coding downstream 321508 24629506 ~ 24645364 (-)
AMCG00007667 pkm,kpyk coding upstream 10175 24989512 ~ 25006830 (-)
AMCG00007677 NA coding upstream 343751 25323088 ~ 25334806 (-)
AMCG00007678 NA coding upstream 360025 25339362 ~ 25355884 (-)
AMCG00007679 NA coding upstream 380442 25359779 ~ 25362397 (-)
AMCG00007675 chrna5,LOC106587222,LOC108440259,LOC106562132 coding upstream 385700 25365037 ~ 25380395 (-)
G25248 NA non-coding downstream 424714 24498365 ~ 24542158 (-)
G25239 NA non-coding downstream 459053 24433080 ~ 24507819 (-)
G25177 NA non-coding downstream 598499 24368169 ~ 24368373 (-)
G25176 NA non-coding downstream 612562 24350030 ~ 24354310 (-)
G25175 NA non-coding downstream 619453 24347099 ~ 24347419 (-)
G25375 NA non-coding upstream 2597 24981934 ~ 24982139 (-)
G25387 NA non-coding upstream 9508 24988845 ~ 24989054 (-)
G25415 LOC108275329,LOC103046663,LOC108436939,LOC105912564,LOC107696286,LOC103375935,LOC106584709,LOC104942717,LOC107753195 non-coding upstream 228437 25207774 ~ 25247379 (-)
G25421 NA non-coding upstream 273379 25252716 ~ 25256361 (-)
G25446 NA non-coding upstream 472426 25451763 ~ 25452022 (-)
AMCG00007637 NA other downstream 685308 24262690 ~ 24281564 (-)
G25026 NA other downstream 994207 23971671 ~ 23972665 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other downstream 1546569 23406928 ~ 23420303 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other downstream 2390418 22561496 ~ 22576454 (-)
AMCG00007565 gatm other downstream 2608426 22340599 ~ 22358446 (-)
G25422 NA other upstream 284995 25264332 ~ 25264951 (-)
AMCG00007684 shf,LOC108430988 other upstream 651455 25630792 ~ 25631592 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other upstream 1074427 26053764 ~ 26070848 (-)
AMCG00007704 NA other upstream 2378394 27357731 ~ 27370519 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other upstream 3915356 28894693 ~ 28921123 (-)

Expression


Co-expression Network