AMCG00007669 (celf6,LOC103138107)


Basic Information

Item Value
gene id AMCG00007669
gene name celf6,LOC103138107
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 25140930 ~ 25170375 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007669
ATGAACCGGCCGATCCAGGTGAAACCAGCAGATAGTGAAGGGCGAGGAGaagaCAGGAAGCTGTTTGTGGGAATGCTGGGGAAGCAGCAGAGTGAGGAGGATGTGCGGCGGCTGTTTGAGCCCTTCGGCCAGATCGAGGAGTGTACCATCCTTAGAGGGCCTGATGGGGCCAGCTGTGCCTTTGTCAAGTTCTCCAGCCATGCAGAAGCACAGGCCGCCATCAACAATCTGCACGGTGGACAGACTATGCCAGGGGCCTCCTCAAGCCTTGTGGTGAAATTCGCAGACACTGACAAGGAGCGGACATTGCGGAGAATGCACCAGATGGCAGGGCAGCTTGGGATATTCAGCCCCATGACAATTCAGTTTGGAGCCTATGGAGCTTACACTCACGCTGTAAGTGATATTTCTCCTTACCAGCAGATTATGCAGCAGCAGGCAGCCCTCATGGCAGCTGCCCAGGGTTCCTATCTCAACCCCATGGCAGCGATTGCAGCAGCACAGATGCAGCAAATGGCAGCTTTTAACGTCAACGGCCTGGTGGCAGCTCCCATGACACCGTCCTCAGGCACCAGCACTCCCCCAGGCATTAGTGCGACAGCCGTGCCTAGCATAGCTACACCTATTGGGGTAAATGGTTTCAGCACTCTGCCTCCCCAGAGCAATGGGCAGCCTGCCTCTGAGCCCATCTACACCAATGGGATTCACCCTTATCCAGCACAAAGTCCCACTGTGGCTGACCCTCTTCAGCAGGCTTACGCTGGCGTGCAACACTACGCAGCAGCCTATCCAGCCGCCTATGCGCCAATCAGTCAAGCGTTTCCGCAGCAACCAACCATCATTCCTCAGCAACAGAGGGAAGGACCAGAGGGCTGCAACCTGTTTATTTATCATCTACCCCAGGAGTTTGGAGACGCCGAGCTCATGCAAATGTTCCTGCCTTTTGGCAACGTCATCTCGGCCAAAGTCTTTGTAGACCGGGCCACCAATCAGAGCAAATGCTTTGGCTTCGTCAGCTTTGATAATCCATCGAGTGCTCAGGCCGCCATCCAGGCTATGAACGGTTTTCAGATAGGAATGAAGAGGCTGAAGGTACAACTTAAGAGGCCAAAGGATGCTAACCGACCTTACTGA

Function

symbol description
celf6 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splice site selection and regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human CELF6 (CUGBP Elav-like family member 6).

NR:

description
PREDICTED: CUGBP Elav-like family member 3-B isoform X4

GO: NA

KEGG:

id description
K13207 CUGBP, BRUNOL, CELF; CUG-BP- and ETR3-like factor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007669 True 1134 mRNA 0.55 10 25140930 25170375

Neighbor

gene id symbol gene type direction distance location
AMCG00007670 celf6,LOC104962849,LOC106911022 coding upstream 64232 25068061 ~ 25076698 (+)
AMCG00007663 parp6,LOC106587213 coding upstream 105242 25015676 ~ 25035688 (+)
AMCG00007664 NA coding upstream 152795 24984997 ~ 24988135 (+)
AMCG00007665 NA coding upstream 156907 24982673 ~ 24984023 (+)
AMCG00007658 NA coding upstream 335442 24804508 ~ 24805488 (+)
AMCG00007673 NA coding downstream 62515 25232890 ~ 25233495 (+)
AMCG00007672 LOC103046663,LOC107096723,LOC100697142,LOC101479677,LOC102219286 coding downstream 71579 25241954 ~ 25247349 (+)
AMCG00007671 NA coding downstream 77426 25247801 ~ 25256361 (+)
AMCG00007674 LOC107097412,LOC102790211 coding downstream 133904 25304279 ~ 25314909 (+)
AMCG00007680 LOC107661444,LOC108436947,LOC107696278 coding downstream 284305 25454680 ~ 25467236 (+)
G25367 NA non-coding upstream 187602 24953125 ~ 24953328 (+)
G25302 NA non-coding upstream 199350 24934479 ~ 24941580 (+)
G25303 NA non-coding upstream 229559 24879365 ~ 24911371 (+)
G25300 NA non-coding upstream 279062 24817342 ~ 24861868 (+)
G25209 NA non-coding upstream 576078 24554268 ~ 24564852 (+)
G25405 NA non-coding downstream 145412 25315787 ~ 25321025 (+)
G25445 NA non-coding downstream 281158 25451533 ~ 25451793 (+)
G25531 NA non-coding downstream 883326 26053701 ~ 26061246 (+)
G25561 NA non-coding downstream 963986 26134361 ~ 26134577 (+)
G25562 NA non-coding downstream 966392 26136767 ~ 26142288 (+)
AMCG00007640 NA other upstream 641280 24476487 ~ 24499650 (+)
AMCG00007631 NA other upstream 946449 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 1470851 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 1947409 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 2001409 23133811 ~ 23139521 (+)
G25822 NA other downstream 2913447 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 3268269 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 3511796 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 3729683 28900058 ~ 28911566 (+)
AMCG00007769 acsbg1 other downstream 3832720 29003095 ~ 29006379 (+)

Expression


Co-expression Network