AMCG00007671


Basic Information

Item Value
gene id AMCG00007671
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 25247801 ~ 25256361 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007671
GTGCGCAGGTCAAACCAAAAGCGAGTTAGGAAATTGTTCGCCAGTCTGAAGGGTGTAATCCAGTGATCACTAAATATTTAACGTGTTTACGCGCCATGACGATAAAGAAGAAGCAATGAGAATAGAGAACATTTAAAGCGAAAAACTAAGTGAGACGGGAAAATGGAGGAACAGGAGAAAAACTCGCTGATTACAATACCCGAGTCACAAACACCGGGTCCCAGTACCAGACCAAAGCGGGCTGAGAGTGGGCTGAGGCCAGTGGAAAAGAGAGGCCCTTACATCATGTCCAGAGTTCCTGCCATTCACCTCAAACTGCAAAAGCACAGAGATATGGCACGCAAGGCCCTGAAGAAGAAAGGAATGATGGGTGGAGTCGTGGCACAGCAACCCAAACAGGGAGCTAAGAGGAGTGTGAAGTTTAATAAGGGCTATGCTGCTTTGAGTCAGAGTTCTGAAGACACTCTTGTATCACTGGATTCAGATAGTGATGCTGAGCTGGAATCCCAGTATTCCTCAGGATACTCCTCAGCAGAGGTTAACCAGGATCTGAACAGGCAGCTGCTGCAGGATGGCTACCGACTGGATGAGATCCCTGATGATGAGGACCTGGATCTCATCCCTCCTAAAGCCATGGGTTCCTCTTCCTTTGCCTGCTGCTGTGCAGAGATCCCTTCCTGCTGCGTCCAGTAACACAGGGCACACAGTGTGGCCCGAGCAGGGGGTGCTTCAGTCTTGAGAATGGGTGGTAAGGTCAGTGTAGGCGGAGAGGTCTCTCGTGGGTCACTGCTCTGCCTCTTGACACCTTCACTGTACGTAGATGTGGTGGCACTCTGTGGTCTGGTATTGTAACTGATCCTCGTCTTGCTTGATTTCTGCCCATAACTGGAAGCTTCTACTAAACGTCTCTCCAGCTTTTGAACTTTGAACAGTTACTGAAGGGTGAACTAGAAATTGTCAGAAATGTTCACAGCGTAATCTAAAAGTAAGTCAATTTGCTATTTAAATTACCATCATCACTTATGTTACTGAATTTATAAGGTATCAGAAAGTTGCTATTTTGACTCCCAAATTTACATGGGACTCATAGTTAAATATAGATGCcttgtggaggaaaaaaatatatatgagatTTAATCTTTATAgtaaagttttatttaaacaggtcACACCTCTATAGCATTTTATGTGGTTATTATTTCAGGCAATATTGCCTTTATAAGACTTTTAATTAATCCCACAGTGACGCTGGGATTATAGGATCTAGAAAATTGATGCACAGTTGATGCTGAAGGTGTTTGAGAACAATTGTTGCAAAATCTGAATTTTGCTAAACTGCACTGAATTTTTTCTCTAGGGGATAGATATTCAGCTCCAtacattatattgcatttgGAGAATGCAACCCATCAGTTAATATCCCACTTTTGTCAATCTTTATGGAATtagttacatttataaaaagaacaaactaTCAGAAATTAATCTTATGAGTACCAGTTTACGAACATAAATATAGTTCCTTTGGAATTACCATCTTATTCACTTGCAAAATTGCATGACACCTTTACTGCAagtatctgtttaaaaaaaatgaaagaaaccaACACTAATGTATGAATACAAGTACTAATTTGCATAAAACTGATTTACAGAAAAGATGGGAGGACCTCTAAGCAAGTCCCTCAGGTTCTTTGTTATTCTTTGTATGAAAACCAAAGAGCGGTGTGTTACTTTACTTCATGACAAATGGTATTTCCCTTGAAAtagtagtatttgttttatcctGCACTTGTAATCATTCTTTATATTCAGGCTCAAACTAGTTCTCTATAGTGATGTGCATTTTGTTGTAAGAAACCAAATGTACATTATGTGGGCATATccccacaaaaaacaaatgagtctgaaacatttaattttggtaAAGTATTTTTAGTACTGAGAAACCTTATGgaaatatttataagaaaagtCAAGAGAGATTGGTTATTCAGTATTGTCCACAGAAGCACTActaagtatataatatatctaAAGTGAATTATCACCaaactttaattttcttttagtattaagtgaatttatttatctataaaaagcaaataatgaTATGTTCCTGGAAGCAAACgctgtaactttttttttttatgaaggcactcaaaaaactaattttcttatgcttaaaaCTTCAGgaactaatatttttttaataatttgataaatatCCATAAAGTTTGTAGCTCaaaattttttaaaaaaaatcctgtttttaAAGGTGACCCTAAAGATACAAGTCTGCACTATGAAATCTAATAAGAAAAAGAATGCTGGCAAAATAAAtcgattttaaaattaatagtaTTTCTTCCTAGAAATGACTGGTATCTTTTGTGCACATAGTTAAAACATTTGCCTGCTGTCCTGTATAGCACAACACGTATAATGcagcacacagtcacacaatgCAGTTACAGGCACTATGTCTTTCTCAATTGCATATCAGTGATGGTTGGCACCAGCAACAAGGAATACTACAACTTTAGAGTGCCTTTTACAAATACTACAAATTTCCCATTCCTAGCAAATTGCtctttttattaaactgaaactGCTCATCAGaagtaaatgtatgtttttacacAAAGGTTAATCTGTTAAACAtgaattttacatttctctctAGTTCAGTGATTGcgttgtattttttatttgttcgtTGCAGATTCTCCCCCCGtgtccattcatattttttgatGTTTATACTTAAGTATAAAGCTTATTTTCAGTTTAGTCTAAACTCTATTTTCATTCTCGGCATGCATGTCCCTAATGAGCGCAATTGGAACATTGAGTCTATCACAGATGTTGGACGTTTCATTTTTACAACCGTTATAGATAACCTATGAAGCTGCTAATAAAGCATAGAGGTGTGATAATCCAAGTGACAACACTGGGATACTCTGTGTTTACGTGGGTTACTacagaaataaagtaatttagTAAAAAGTCTGTTTTGACGCATGTATGAAGTTTGAAAAGgtcatgttttcaaaatggcTACAGTAGAAGGCCCCGCCCGGGTTCGTTATTCTAACAATATTATGTATACACAATGcaccattttgaaatattaaagttAAAGCACTTTTCAATGTTGGGAGTTCTGTTACTCTTTCCATGTGAAAAGCACAGGGAACACACAGTGACTCTGTTGTCCAAGCTGTTGTAATCAGCAAATGCATGAAAGTTATTGCGCTTGGGATTGTCTTCAGAAATCGGTTGATCTTctcttttcaaaagaaaatctgtaattaaattattttgaagagGAACCAAACTCTTTTACATGTTGTTTGTGGTTCTGACCCTCTGCAGCTCTGAGAGTGGCCTGTAGAGGGACCCAGATTGTaagtttttcatttacaatgaGAGTACACAGACAATGTTGAGTACTCTGAATTTGGAGACACCAGTAGAATGAACCAGATGTATTGGAGATGTAGGCATTTCTGTTGTAAAGATGTAATTTCTCACAtgcttttattatataataggacagtctttttttttttttttttcgctcaATGTCTGGAAAGTGACAGGTGTACATAGGAGTGTGCCTTTTTATATAACGGCTAGATTTAATATTCAATAACTGAAATGTGCTTCCTCTAAGGCATCCCACTGATAAACATCTCATTCACAGATGTCTAATATGGTTACACTGGTAGTATTGAATATCTGATGACATCTTATAAAACAAATTCGATTGCCATGGAACTTCattgtatttcttctgtttgttttgttattattctttcttttccatgGCGACTGTGTTTCCTTCTGTGACTGAAGAATGTTTTGGGTGCTTTGTGCCGCATCTTGAATGCAAGCTTTGTGTccgtttagatttttttatgtgcacatttgtgttttgaactACAAACacgtgtctgtgtatgtattctatatgtgtgagtgtgttctaTATAGATAGTGTTTATCCcacagtgcagtgtgcagtTGCTGTCACTGCACATATCTGTACTATGCAACTGACCTGACAATCCTTTCTTTAAACACTTTGCTAATTAATGCTCTTACAAGTAAATGAGTGCTGAATGCAATAATGTCATATACTTTATAGTTCTATTAATGAAAgctaatatttgtatttaattgatgtgttgctgtttataaataaatacatttaacata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007671 True 4224 mRNA 0.36 6 25247801 25256361

Neighbor

gene id symbol gene type direction distance location
AMCG00007672 LOC103046663,LOC107096723,LOC100697142,LOC101479677,LOC102219286 coding upstream 452 25241954 ~ 25247349 (+)
AMCG00007673 NA coding upstream 14306 25232890 ~ 25233495 (+)
AMCG00007669 celf6,LOC103138107 coding upstream 77426 25140930 ~ 25170375 (+)
AMCG00007670 celf6,LOC104962849,LOC106911022 coding upstream 171103 25068061 ~ 25076698 (+)
AMCG00007663 parp6,LOC106587213 coding upstream 212113 25015676 ~ 25035688 (+)
AMCG00007674 LOC107097412,LOC102790211 coding downstream 47918 25304279 ~ 25314909 (+)
AMCG00007680 LOC107661444,LOC108436947,LOC107696278 coding downstream 198319 25454680 ~ 25467236 (+)
AMCG00007681 NA coding downstream 278148 25534509 ~ 25534985 (+)
AMCG00007682 LOC102220226,LOC108442892 coding downstream 279193 25535554 ~ 25673151 (+)
AMCG00007685 NA coding downstream 441862 25698223 ~ 25708138 (+)
G25367 NA non-coding upstream 294473 24953125 ~ 24953328 (+)
G25302 NA non-coding upstream 306221 24934479 ~ 24941580 (+)
G25303 NA non-coding upstream 336430 24879365 ~ 24911371 (+)
G25300 NA non-coding upstream 385933 24817342 ~ 24861868 (+)
G25209 NA non-coding upstream 682949 24554268 ~ 24564852 (+)
G25405 NA non-coding downstream 59426 25315787 ~ 25321025 (+)
G25445 NA non-coding downstream 195172 25451533 ~ 25451793 (+)
G25531 NA non-coding downstream 797340 26053701 ~ 26061246 (+)
G25561 NA non-coding downstream 878000 26134361 ~ 26134577 (+)
G25562 NA non-coding downstream 880406 26136767 ~ 26142288 (+)
AMCG00007640 NA other upstream 748151 24476487 ~ 24499650 (+)
AMCG00007631 NA other upstream 1053320 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 1577722 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 2054280 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 2108280 23133811 ~ 23139521 (+)
G25822 NA other downstream 2827461 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 3182283 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 3425810 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 3643697 28900058 ~ 28911566 (+)
AMCG00007769 acsbg1 other downstream 3746734 29003095 ~ 29006379 (+)

Expression


Co-expression Network