AMCG00007672 (LOC103046663,LOC107096723,LOC100697142,LOC101479677,LOC102219286)


Basic Information

Item Value
gene id AMCG00007672
gene name LOC103046663,LOC107096723,LOC100697142,LOC101479677,LOC102219286
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 25241954 ~ 25247349 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007672
CCAGCATGAACGTTGGACTTTCAGGAGTGGGGTTTATTCTCACCCAAGATGGCAGACTCTTCTTAAGCGTCACATTAACGTCAAACTAGATAGGCTTTCCTTCCTGGGTCTATGGTCATGTCACGTACACACACGGACGTACGTCATACCAACCCAGAGTTCCCTGTGGTGCGCAGTCGCAGTAGCGAATCTGTCTTTCCCTTGTGTGTGGTTTCGATGCCCTTCTGTACCGAGTCCTTTTGAGTTTCCGCTTCAGTCTAGCTCGCTCCCCTGCAACATGTTCAGAGCCGCCGTCCGATACACTGCCGTCGGTATCCGGAGTCTGGCCAGGACCCAGCCCCAGCACACCGcTCCGCTGGCATCCCGGCTTTACTCACATGGAAAGCAGGAGACAGACGAAGAGTTTGATGCCCGCTGGGTTACCTATTTCAACAAACCCGACATTGATGCCTGGGAGCTGAGGAAAGGTATGAATACCCTGGTTGGTTATGACCTTGTACCTGAACCAAAGATCCTTGATGCAGCACTTAGAGCTTGCCGGAGGCTAAACGACTTGGCCAGTGCAATCCGCATCCTAGAGGCAGTCAAGGATAAAGCCGGCCCTCACAAAGACATCTACCCCTACGTGATTCAGGAACTGCAGCCCACTCTGAAAGAACTGGGCATCTCCACACCGGAAGAGTTGGGCATCGATAAGGCATAGACCTCAGCCCCCTCAGTACTTCTTCAGAGGTCTGCTGAATGATGTGACAGTTGTTCACTGCTCTTCAAGTCCAAGACTCGTATATACCCATGTTCATGTGATATTTAAATTGGCCTTTGTTGTGTCCTGCtgtgcataaaaaaatatggaCCTAATAAAGGAGGAATATCTTTAATGAAGTGTGTGCTTCCGAGGCTCCCTGCTCCTGCTTTCCATTAAAATGCCCCATATTAAGTgttatcacatttgtttttttagtaaTGGATCGAGATGTATTATccttcacacacatttttatttgtgtactaGCATTTAAGATGCATATTCTTCCTTGACTATAAAAGCTGTCCGAAATCTCCTGTAAACCAAAGACAACATTGAGGAGTACGACTGAACAGAACTCTACTATTGCAACATGAACTTGGGTCCAAGCTGTGGATTTCCAGTAATGCTTAATTACTATTCCATGTTTTGATGAGTTGCATGttttatgctttgttttaatccagTGTATCTTCACATGACTAAAAGGGGGTGGGAAAAAAGACATCTATACCCAATTAGCAGGGTGCATAGTTCAATTTAAGAATACATATGTAAGAATGCATAGGAAACATGTTCATAGGTTTGCAATGGAAAGCTTTCATTACTGGGGAAAGGGGAAAACTAAACCTGTCGATTGGCATATCTTTATTTGCTTGATAACCTACACtgaacattgttttgtttgtattaaggGAATCAGACAGATGGGGTATGCCTTTTTAATAGGAATGAATATCTTCTATTGAGATCTATCAGTCACGGACAAGTAAATGGTATTCATATGAGCACCTGTTACTGTAAGAATTGCAAAATAGGTCTGAAAGTTAACACAATGTACTGGCCAAAAGGCTTCATTTCTTAATGCCAATACAAAGACATGGGAGTATTGCATGTATTATCATTTATTCGTGTTCTATTCTCCATTTATACATCGtgtggcttttttgttttggctgAAGATACCTAAAGGATCCTATGTGATATGGTGCATGGGACTGATCTCTGTCACTTGCATTctttataaaattatttatagggTACTGAAAATTGTCTaatgatattttattaatgaactCGTCCATTCACTACAAGTCCATAAGTTAGGCAGTGTACAGGTTATAATGTAG

Function

NR:

description
cytochrome c oxidase subunit 5A, mitochondrial

GO: NA

KEGG:

id description
K02264 COX5A; cytochrome c oxidase subunit 5a

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007672 True 1875 mRNA 0.43 5 25241954 25247349

Neighbor

gene id symbol gene type direction distance location
AMCG00007673 NA coding upstream 8459 25232890 ~ 25233495 (+)
AMCG00007669 celf6,LOC103138107 coding upstream 71579 25140930 ~ 25170375 (+)
AMCG00007670 celf6,LOC104962849,LOC106911022 coding upstream 165256 25068061 ~ 25076698 (+)
AMCG00007663 parp6,LOC106587213 coding upstream 206266 25015676 ~ 25035688 (+)
AMCG00007664 NA coding upstream 253819 24984997 ~ 24988135 (+)
AMCG00007671 NA coding downstream 452 25247801 ~ 25256361 (+)
AMCG00007674 LOC107097412,LOC102790211 coding downstream 56930 25304279 ~ 25314909 (+)
AMCG00007680 LOC107661444,LOC108436947,LOC107696278 coding downstream 207331 25454680 ~ 25467236 (+)
AMCG00007681 NA coding downstream 287160 25534509 ~ 25534985 (+)
AMCG00007682 LOC102220226,LOC108442892 coding downstream 288205 25535554 ~ 25673151 (+)
G25367 NA non-coding upstream 288626 24953125 ~ 24953328 (+)
G25302 NA non-coding upstream 300374 24934479 ~ 24941580 (+)
G25303 NA non-coding upstream 330583 24879365 ~ 24911371 (+)
G25300 NA non-coding upstream 380086 24817342 ~ 24861868 (+)
G25209 NA non-coding upstream 677102 24554268 ~ 24564852 (+)
G25405 NA non-coding downstream 68438 25315787 ~ 25321025 (+)
G25445 NA non-coding downstream 204184 25451533 ~ 25451793 (+)
G25531 NA non-coding downstream 806352 26053701 ~ 26061246 (+)
G25561 NA non-coding downstream 887012 26134361 ~ 26134577 (+)
G25562 NA non-coding downstream 889418 26136767 ~ 26142288 (+)
AMCG00007640 NA other upstream 742304 24476487 ~ 24499650 (+)
AMCG00007631 NA other upstream 1047473 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 1571875 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 2048433 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 2102433 23133811 ~ 23139521 (+)
G25822 NA other downstream 2836473 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 3191295 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 3434822 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 3652709 28900058 ~ 28911566 (+)
AMCG00007769 acsbg1 other downstream 3755746 29003095 ~ 29006379 (+)

Expression


Co-expression Network