AMCG00007675 (chrna5,LOC106587222,LOC108440259,LOC106562132)


Basic Information

Item Value
gene id AMCG00007675
gene name chrna5,LOC106587222,LOC108440259,LOC106562132
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 25365037 ~ 25380395 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007675
ATGAGACAGGAAAGAGGAGGATCGGAGGGAAGGGGGGAGCTgctggaggtggtggtggtggtggtggtggtggtggaggGATTATCCAACCTCTCTTCCTATGCAAAGACTGAAGACAAACTTTTCAAGCATCTCTTCAGCAGCTATCAGAAGTGGGTGAGACCAGTGGAACACCTGAATGGCACTGTGAGGGTGAAGTTTGGACTAGCAATCTCCCAACTGGTAGATGTGGATGAGAAAAACCAACTGATGACAACCAACGTGTGGCTGAAACAGGAATGGGTCGATGTAAAGCTGCGATGGGACCCTGCAGACTACCTAGGAATAACGTCAATCCGAGTTCCTTCTGACTCCATCTGGATCCCTGACATAGTTCTCTATGACAACGCTGATGGGCGATTCGAGGGCTCTGTCACTAAGACAGTGGTTAAGTATGATGGCACCATCTGCTGGACACCACCAGCCAACTACAAGTCCTCATGTACCATCGAtgtcacttttttccccttcgaCCTGCAGAACTGCTCAATGAAGTTTGGTTCCTGGACCTATGACGGCACCCAGGTGGACATCATCCTGGAGGATTTCCACGTAGACAAGCGTGATTACTTCGATAATGGCGAGTGGGAGATTGTTACAGCCACGGGCAGCCGGGGAGTGCGGACAGACGGCTCCTGCTTCTACCCCTTTATTACCTACTCCTTCATCATCCGCCGGCTGCCTCTCTTCTACACCCTGTTCCTCATTATTCCCTGCATTGGGCTGTCTTTCCTGACCATCCTGGTGTTTTACCTGCCATCCAACGGTGGGGAAAAAATCTCCCTGTGCACATCAGTGCTGGTGTCCCTCACCGTCTTTCTCCTCGTGATAGAAGAGATCATTCCCTCCTCTTCCAAGGTGATCCCTCTGATTGGAGAGTACCTGGTCTTCACAATGATTTTCGTCACCCTCTCCATCGTCATCACCGTCTTTGCCATCAACATCCACCACCGCTCCTCGTCCACTCACCATGACATGGCCCCGTGGGTCCGCCGGATCTTCCTGCACCGGCTGCCAAAGCTGCTGTGCATGCGCAGTCACGTGGACCGCTACGCCACCCCAGGGAGAGGAGGTATCACAGGCCCCGGGTTTGAACCACCTTCTTCCAGAAACAACCTGCAGGCGGCGCTGGACTCCATTCGCTACATCACCCTCCATGTGGTGAAGGAGAATGAAGTCCGTGAGGTTGTGGAAGATTGGAAGTTTGTGGCACAGGTACTGGATCGAGTGTTCCTTTGGACGTTCCTTCTTGTCTCCGTTTTGGGATCTCTTCTTCTCTTCATACCAGTAATTTACAAGTGGGCCAACATCATCGTCCCCAATTATGTAGGGAGCCACAGCTAA

Function

symbol description
chrna5 Predicted to enable neurotransmitter receptor activity. Predicted to contribute to acetylcholine receptor activity. Predicted to be involved in several processes, including cholinergic synaptic transmission; regulation of membrane potential; and response to nicotine. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in interpeduncular nucleus tegmentum and liver. Human ortholog(s) of this gene implicated in lung cancer. Orthologous to human CHRNA5 (cholinergic receptor nicotinic alpha 5 subunit).

NR:

description
PREDICTED: neuronal acetylcholine receptor subunit alpha-5-like isoform X1

GO: NA

KEGG:

id description
K04807 CHRNA5; nicotinic acetylcholine receptor alpha-5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007675 True 1383 mRNA 0.52 6 25365037 25380395

Neighbor

gene id symbol gene type direction distance location
AMCG00007679 NA coding downstream 2640 25359779 ~ 25362397 (-)
AMCG00007678 NA coding downstream 9153 25339362 ~ 25355884 (-)
AMCG00007677 NA coding downstream 30231 25323088 ~ 25334806 (-)
AMCG00007667 pkm,kpyk coding downstream 358207 24989512 ~ 25006830 (-)
AMCG00007668 NA coding downstream 385700 24966872 ~ 24979337 (-)
AMCG00007676 LOC106587228 coding upstream 9794 25390189 ~ 25454403 (-)
AMCG00007683 LOC107739093,LOC107712505 coding upstream 273325 25653720 ~ 25658719 (-)
AMCG00007689 NA coding upstream 292210 25672605 ~ 25681857 (-)
AMCG00007688 NA coding upstream 482627 25863022 ~ 25895601 (-)
AMCG00007693 NA coding upstream 756257 26136652 ~ 26161514 (-)
G25421 NA non-coding downstream 108676 25252716 ~ 25256361 (-)
G25415 LOC108275329,LOC103046663,LOC108436939,LOC105912564,LOC107696286,LOC103375935,LOC106584709,LOC104942717,LOC107753195 non-coding downstream 117658 25207774 ~ 25247379 (-)
G25387 NA non-coding downstream 375983 24988845 ~ 24989054 (-)
G25375 NA non-coding downstream 382898 24981934 ~ 24982139 (-)
G25248 NA non-coding downstream 822879 24498365 ~ 24542158 (-)
G25446 NA non-coding upstream 71368 25451763 ~ 25452022 (-)
G25615 NA non-coding upstream 1618911 26999306 ~ 26999546 (-)
G25617 NA non-coding upstream 1648576 27028971 ~ 27029294 (-)
G25620 NA non-coding upstream 1689491 27069886 ~ 27070099 (-)
G25655 NA non-coding upstream 1873834 27254229 ~ 27257033 (-)
G25422 NA other downstream 100086 25264332 ~ 25264951 (-)
AMCG00007637 NA other downstream 1083473 24262690 ~ 24281564 (-)
G25026 NA other downstream 1392372 23971671 ~ 23972665 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other downstream 1944734 23406928 ~ 23420303 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other downstream 2788583 22561496 ~ 22576454 (-)
AMCG00007684 shf,LOC108430988 other upstream 250397 25630792 ~ 25631592 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other upstream 673369 26053764 ~ 26070848 (-)
AMCG00007704 NA other upstream 1977336 27357731 ~ 27370519 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other upstream 3514298 28894693 ~ 28921123 (-)
AMCG00007768 NA other upstream 3620654 29001049 ~ 29013947 (-)

Expression


Co-expression Network