AMCG00007682 (LOC102220226,LOC108442892)


Basic Information

Item Value
gene id AMCG00007682
gene name LOC102220226,LOC108442892
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 25535554 ~ 25673151 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007682
ATGAACCGGCAGCCGGCTTTTAACATTACAGCAGCACACCATCGactttCTGCTTCAACCTACGATATTTTAGAGTTACCTTCCCATTGCACCATTAAGCTCTATGGCACTCCTGTCAAGGAGGTCCCAAATACTGTAGTAACAGAGTCTGGGATCCTGCTCTTACCAAGTCACACCCTTTGTTCTGTCATCACTGGAGTGGTTTCTGTGTCCCCTGGTCCCTTAAGTAACCTCCCTGTGCTCATTAGTTTCACGTCCCAGTCCTTCTCTCATGTTCTACAGAAGCACAGCCTCCTCATTATCCTTGAGGACTATGCTGATCCCTTTGATGCCAAACAGGCCAGTGGGACCCAGGCGGTCCAGGAAAAAGTCACGGAGAACGATGGCTACATGGAACCATATGAGGCCCAGAAAATGATGGCTGTTTACCTACTTCTTCAGGTCTTCTCCCTCGTCTCCTGGCTGAAATTTGCTGTGTTGGCCAAACATGCTTATCAATCAATAGCAATAGACTACAAGCAGCAAGCAGCCCAGCCATTGAGGCTGAGCGCATCACTCACAGAAGCACTGTCAAGCTTCCAGTCTGCCAATAAATCTGGTGTGAAAGTTCAGAGGTCAGGCGACAGGACGTATATTTTGCAGACCAGTATTCCCTGCTGTCTCTGCCACTGCTATCAGTCTGAGGTCGGTTCTGTGCAGGAGGCGGGGATTCGGATGACATTCCGGACGGCTTTCCTGTTTCTGGTACATAACTGGCTAAATCCCATTTCTGCCGTGGCAAATGCCGAGATCAGTACATTGAATACCTGCTGTGGTTTGGCACAGCGCAAGCACAAGAATGCAATGCTTTCAGTGGAAGATAGGATTCCTGAAACACTAAGGGCTTTATCATCAAAAGGAACTAGCACGTCCGAGATTCGTGGAGGAAGAGGTCCAAAGGATGGCCCCGTGAAGCAGCTGCACCTGTACGATACTCCATACGAACCAGCAGAAAACGGCAGTGACTCAGATCCTGCGCGAGGGGGGCCCCGACCTCCCAGAGAAAGCCGTCTACCTCAGGACGATGAACGGCCCCCTGAGGAATACGATCAGCCCTGGGAGTGGAAGAAGGACCGGATATCAAAGGCCTTTGCAGCTCTGCTTTGTTATAGCTGCATTAGCTATGGCGGTGCTGTAACTTGCATTGGATCTGAGCCCTGGGAGAGAAAAGAGGACAACGTCTCTAAAGCAGTCACAGTATCACCTGTCCGCTATGGGAAATTCCAACCGGGCATGACCCACTTTCAGCAAGAGAACACACCCAGGGCAATGCCAGGCTGGCCAGACATGCGTTACGTTGAGATTAAAGTGATCAAGGACTTGCCCTGGCCGCCTCCCGTAGGGCAGCTAAATAGCAGCCCCCCTACCGAGGGGGGAGAAGCCCCCTCACAGCCGGCCCAGCCGTCTCCTGGCCAGACTGCCTCTGACGATCACCACGGTGGGAGTAACCAAGGCTTCATGCACATGAAACTTTCCCGAACCAAAGAGAACAAGTACATCCTTGGACAGAACAGCTCTCCCTTTGACAGCGTGCCCGAGATCATTCACTTCTACTCCAGTCGCAAGCTGCCAATCAAGGGGGCTGAGCACATGTCACTGCTGTACCCTTCACCTCAAGCAGACAGGAGACAGCTCGGCTCTAACAGTCCACCCACAGTTGCCCGTGGCCACATGAGCACGGGCCTCCGGTCTCCAAGTGGGGCTCTGCCAGGCCCTGCCACCCTGTCTGCAGCCACAGCAACCCAGGAGGATGCTTCAGGTTCTCGGGCAGGGCTGTTAAAAGAGTTTCTCATCAATTACTTTCTCATTGATGAAAAGTTCTACCCTCCTGGCACGGATGTTTTTAAGGCCGGGAAAAGGCCGGGCCTGGTTACAATATTCCTTCCGTTATTCCTTCTCATCAGTGGATTCATTTCTATCACTTATAAGCAGATGCTTATAGTCAACTCATGGGGCGCCCCCTGCAAAGATGAGCTCCAGTGCCGCCTGGATATCCCCCCCTGTGGCCTGCAGAGCCCGCAGGATCAGCTCCTCGTCTCGGATGCCCATGTCCCGCAACTGCTGCTTGAGAGGCTGGACACCTGCAGTGCCTGCTGCAGCGCCTGGGTGAAGATGTCGTTGGTGATGGGGGTCCCAGCAGGCATTCCAGAAGAGCCCATCACGGAAGCCTACACTATGGTTGTGCCCAAACATTTCTCAGAAAACCCTCCAAAGATGGTCGGCCTTGTGACCTGCAAGACTTACCCGGCATGTCGCTGTAGGAGCTGGCAGAGACATTGCGGGACGTGCTGGCACTCTGTGGAGGAGGAACACTGCCAGCCACGGAGTGCGGTGCTGGTGTGCAGTGCAGCCTGCAGCACACGGAACTCCCTGGCAGCAGTCGTCCTGTCCACAGGCTCTGGAGTGGCCAAAAATAGCCAAAGGAAATTGAGCATCTGGCGGCGGGAGACTTGTGACACTCACCCGCCATTACTGCACAGTGCCTGCGCTTGTCTGGAGCCCTTTTCTTTCTATAATTTCCCACGAGATAAAGAGAAGCAGCAGGCATGGGTAGAAGCGGTGGGGAGGAAGAACTTTATACCGGGGAAGGGGACGGTGGTCTGCTCTAGACACTTTCTGCAGGGATCGCCCACTCCCGAGCATCCTGTGCCTGTGCTCGACATGCACATCTCCGAAAATGAAGACAAAACGGAGAGCAATAACTGTGGGGAGGAGAAAGTGGCCAAGAAAAGGGTCTACAAAGTGCTGCTTGAAGAGAGGAGCGACGACACCTCCTGCAGTTCGGATAAGAAGAAGCCCGAGAGGGATGTGCGATACCCCCAAGGGTCGTGGGAGCAAGCCACCGTTGAAGCCATCATGCAGCTGCGCAACCTGGACAGCCCGAGCAGCTTCCAGGTGGCGCAGACCACCATCGCCAACCTGAAAGACGAGAACGACTTCCTCCGGGCGCAGAACAGCAGCCTGCAGGCGGAGCTCAGGTCCGCCAAGGAGGCACTGGAGACCGAACTGAAAGAGACCAAGCAGGAGCTGGCTGCGATGAAGGAGTTCAAAGTACCGACCACTGAAAAGCCGGGAGAGACGGTGACTTTCCGCACTCTGCTTTTGAACCGCTGCCAGAAGGAGTTTGAGATGGAGGAGGATGGAGACGAGGTCTtcaagaagaaacagaagaccTGGACCTCGAGACAGCCAAGAAGCCGGTGGTATAAACCCCGCATGGACCAGTACTTCAGCCAGATGGAGCAGATCATCAAAGAGAGGAAGACCTCCTCTCTAATCCACTTCTTGCTGCAGGATGTCTTGGACCTGAGAAGAGATAACTGGGTGCCCTGGAGGGGTGACCAGGGTCCTAAGACAATCGACCAGGTCCACAAGGAAGCAGAGCTGGAGGCGCATCGTGAGCAGATCAAGGTGCAACAGCAGCTCATGAGCAAGAAGGACAACCGACGTGATGCGAACTTCAGCGAAAGTGTCCTGTCACGTGTCGGTCGggccagagcagagcaggcCAGGAAGAGAGGGACTTTTgaTTGGAACATCACCAGACAAATATTCCAGCAAAGCGGAGCCAGGATCCCTTACTCTGGAAATCCTAGTGGGGGACAAGCCAGCCTGAACACCTCCTTAGACATGGGGCTCAGTCTGGCATGGTGGCCGGACCTGCCTTACCTTGGCTGTCTCGAGATCCAGGTCTTTGCCGATAGTGGAGAGGAGTCGGCACAGGCACTCCAGGGACTCATCGTGTTCGTCACGTAG

Function

NR:

description
eukaryotic translation initiation factor 4 gamma 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007682 True 3795 mRNA 0.54 32 25535554 25673151

Neighbor

gene id symbol gene type direction distance location
AMCG00007681 NA coding upstream 569 25534509 ~ 25534985 (+)
AMCG00007680 LOC107661444,LOC108436947,LOC107696278 coding upstream 68318 25454680 ~ 25467236 (+)
AMCG00007674 LOC107097412,LOC102790211 coding upstream 220645 25304279 ~ 25314909 (+)
AMCG00007671 NA coding upstream 279193 25247801 ~ 25256361 (+)
AMCG00007672 LOC103046663,LOC107096723,LOC100697142,LOC101479677,LOC102219286 coding upstream 288205 25241954 ~ 25247349 (+)
AMCG00007685 NA coding downstream 25072 25698223 ~ 25708138 (+)
AMCG00007686 loxl1 coding downstream 346663 26019814 ~ 26036364 (+)
AMCG00007691 ppcdc coding downstream 397608 26070759 ~ 26083421 (+)
AMCG00007690 LOC107583870,LOC107742881 coding downstream 423575 26096726 ~ 26115608 (+)
AMCG00007692 NA coding downstream 444945 26118096 ~ 26131010 (+)
G25445 NA non-coding upstream 83761 25451533 ~ 25451793 (+)
G25405 NA non-coding upstream 214529 25315787 ~ 25321025 (+)
G25367 NA non-coding upstream 582226 24953125 ~ 24953328 (+)
G25302 NA non-coding upstream 593974 24934479 ~ 24941580 (+)
G25303 NA non-coding upstream 624183 24879365 ~ 24911371 (+)
G25531 NA non-coding downstream 380550 26053701 ~ 26061246 (+)
G25561 NA non-coding downstream 461210 26134361 ~ 26134577 (+)
G25562 NA non-coding downstream 463616 26136767 ~ 26142288 (+)
G25574 NA non-coding downstream 589676 26262827 ~ 26270720 (+)
G25588 NA non-coding downstream 640212 26313363 ~ 26313565 (+)
AMCG00007640 NA other upstream 1035904 24476487 ~ 24499650 (+)
AMCG00007631 NA other upstream 1341073 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 1865475 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 2342033 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 2396033 23133811 ~ 23139521 (+)
G25822 NA other downstream 2410671 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 2765493 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 3009020 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 3226907 28900058 ~ 28911566 (+)
AMCG00007769 acsbg1 other downstream 3329944 29003095 ~ 29006379 (+)

Expression


Co-expression Network